PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 283aa MW: 32119.6 Da PI: 5.6908

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g008670.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+++ ++ G+ +W + +++ g++R++k+c++rw++yl Solyc12g008670.1.1 14 RGPWSPEEDNILKNYLEKNGTSgNWISLPQKAGLRRCGKSCRLRWLNYL 62 89****************99***********************97 PP
2	Myb_DNA-binding	44.5	3.5e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +++ + +q G++ W+ Ia+ + gRt++++k++w++ Solyc12g008670.1.1 69 GGFTEEEDNIILTLYRQIGSR-WSVIAANLS-GRTDNDVKNHWNT 111 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.032	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.16E-26	12	109	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-14	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-23	15	69	IPR009057	Homeodomain-like
CDD	cd00167	4.27E-8	16	62	No hit	No description
PROSITE profile	PS51294	22.196	63	117	IPR017930	Myb domain
SMART	SM00717	5.1E-13	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-12	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-23	70	116	IPR009057	Homeodomain-like
CDD	cd00167	5.86E-10	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGRAPCCDKT KVKRGPWSPE EDNILKNYLE KNGTSGNWIS LPQKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIL TLYRQIGSRW SVIAANLSGR TDNDVKNHWN TKLKKKHLAA 120 QNNNLINIGY NFTNNINSSD LNHNYSRNYY GKLDYSNTFT SHMDPNVTNC DQFPLPTLME 180 IQGNDATIQE DGSLDSCQIL QKCVTFEEIS MCPTMFSKST INTDRNYMNS SSGISSSSSS 240 YYEDILENGF DFQENDVGGV DPNSSYYNNI LEIDQLFKGF EN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-24	14	116	7	107	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g008670.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251651.1	0.0	transcription factor MYB36-like
TrEMBL	M0ZHL6	1e-174	M0ZHL6_SOLTU; Uncharacterized protein
STRING	Solyc12g008670.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	2e-69	MYB family protein

Link Out ? help Back to Top
Phytozome	Solyc12g008670.1.1
Entrez Gene	101263789

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]