PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g008660.1.1 | ||||||||
Common Name | LOC101263489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 45796.2 Da PI: 6.6604 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.4e-08 | 161 | 181 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C +aHg Solyc12g008660.1.1 161 ACPEFRK-GNCNRGDSCEYAHG 181 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.4E-6 | 156 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.385 | 157 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 161 | 183 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-6 | 161 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-4 | 188 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.49 | 191 | 214 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.625 | 191 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0061157 | Biological Process | mRNA destabilization | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003727 | Molecular Function | single-stranded RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MVKLHFLSPL YIQTDHHRLN FKSPPLFQLA MIGERSRRIP TVDVPPWSYS DDQTANMQFM 60 LSPSTNSIST PNNFNFSNFI VEDDYPLFCN DAEDIDEFEL ENREIELPVD VYACDNFRMY 120 EFKVRRCGRG RSHDWTECPY VHPGEKARRR DPRKFHYSGT ACPEFRKGNC NRGDSCEYAH 180 GVFECWLHPG RYRTQPCKDG GNCKRRVCFF AHSPEQLRVL GPGSGSSPGP GSDSPRRYVK 240 GLHFVSSPES SSPPSESPPM SPMTANSFTS LSRSVGSNSV SEVMASLRQL QLNRLNSMPS 300 SSWNVQMGSP VFGSPRRPVI RPGFCSLPAT PSGDPTRPGN RCFDLWENEE EPVMERVESG 360 RDLRVKMFER LSKENPLDDP ENPNPNINSG SGLNPDVGWV SDLIQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.21600 | 0.0 | fruit| stem| trichome |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g008660.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251650.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-113 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A3Q7J3G8 | 0.0 | A0A3Q7J3G8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g008660.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-95 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g008660.1.1 |
Entrez Gene | 101263489 |
Publications ? help Back to Top | |||
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