PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g008660.1.1
Common NameLOC101263489
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 406aa    MW: 45796.2 Da    PI: 6.6604
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g008660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08161181526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ f++ G C++Gd+C +aHg
  Solyc12g008660.1.1 161 ACPEFRK-GNCNRGDSCEYAHG 181
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.4E-6156182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385157183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4161183IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6161181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4188218IPR000571Zinc finger, CCCH-type
SMARTSM003560.49191214IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.625191215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVKLHFLSPL YIQTDHHRLN FKSPPLFQLA MIGERSRRIP TVDVPPWSYS DDQTANMQFM  60
LSPSTNSIST PNNFNFSNFI VEDDYPLFCN DAEDIDEFEL ENREIELPVD VYACDNFRMY  120
EFKVRRCGRG RSHDWTECPY VHPGEKARRR DPRKFHYSGT ACPEFRKGNC NRGDSCEYAH  180
GVFECWLHPG RYRTQPCKDG GNCKRRVCFF AHSPEQLRVL GPGSGSSPGP GSDSPRRYVK  240
GLHFVSSPES SSPPSESPPM SPMTANSFTS LSRSVGSNSV SEVMASLRQL QLNRLNSMPS  300
SSWNVQMGSP VFGSPRRPVI RPGFCSLPAT PSGDPTRPGN RCFDLWENEE EPVMERVESG  360
RDLRVKMFER LSKENPLDDP ENPNPNINSG SGLNPDVGWV SDLIQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.216000.0fruit| stem| trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g008660.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251650.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-113C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A3Q7J3G80.0A0A3Q7J3G8_SOLLC; Uncharacterized protein
STRINGSolyc12g008660.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-95C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]