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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc12g008350.1.1 |
| Common Name | DREB2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
ERF |
| Protein Properties |
Length: 300aa MW: 32994.6 Da PI: 4.617 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc12g008350.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.8 | 4.8e-17 | 87 | 135 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g
Solyc12g008350.1.1 87 YVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 135
99***998.**********854...6**********************99887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MIIMSTEQPN CSESTESSCN SSSSSSPSSP SSVLLQPLPQ INSKNRLKRC RGEEEVEEEE 60
DVVVNNPNPK KMNKNNNNGS STSVVSYVGV RMRAWGKWVS EIREPKKKSR IWLGTFATPE 120
MAARAHDVAA MSIKGTSAIL NFPQFSHLLP RPVTCSPRDI QNAAVKAAHM DHLNPKFSIL 180
PETSAATMTS SSSSLSLVSG VTSSSSSFQD DEESRPSPPE LIPEATGQLS EIVELPKLGS 240
SYELVESTQS LFESDEWWDN NYGNCEYFFG QDNYISSNME FTGLENVVST SFESFLWQH*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Function -- GeneRIF ? help
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- Physiological, biochemical and transcriptomic analyses showed that SlDREB2 enhanced plant tolerance to salinity by improvement of K(+) /Na(+) ratio, and proline and polyamines biosynthesis.
[PMID: 26082265]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF500012 | 0.0 | Lycopersicon esculentum dehydration responsive element binding protein (DREB2) mRNA, complete cds |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Galuschka C,Schindler M,Bülow L,Hehl R
AthaMap web tools for the analysis and identification of co-regulated genes.
Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
[PMID:17148485] - Hichri I, et al.
SlDREB2, a tomato dehydration-responsive element-binding 2 transcription factor, mediates salt stress tolerance in tomato and Arabidopsis.
Plant Cell Environ., 2016. 39(1): p. 62-79
[PMID:26082265]
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