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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc12g007070.1.1 |
| Common Name | LOC101248645 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
HSF |
| Protein Properties |
Length: 370aa MW: 41173.2 Da PI: 6.3781 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc12g007070.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 112.4 | 3e-35 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
F++k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++
Solyc12g007070.1.1 10 FVMKTYQMVNDPKIDGLIAWGTANNSFIVVEPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTH 91
9****************************************************************999.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i rkk++
Solyc12g007070.1.1 92 LLKNIVRKKHS 102
********976 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MEANNIIAPF VMKTYQMVND PKIDGLIAWG TANNSFIVVE PLDFSQRILP VYFKHNNFSS 60
FVRQLNTYGF RKVDPDKWEF ANEWFLRGQT HLLKNIVRKK HSRNSCSQKQ DESEDEEILT 120
EISRLKQEQK ALEHEVENMT RRLEATEKRP QQMMAFLCKV VDDPEILPRI LMEKERSKRL 180
SLTNREKKRR LVISNSTSCS SVKSEDALGA TSSFHSPDAN FDKDAICQSS PSSGTPPPPT 240
AWLGSRPMIT YEPGTIQSIR SPDANFDKDT FYQSSPSSET PSTAWMNQQK VIIGGRPMMM 300
INEAYGSCPT MSSTLSTGSS ESGGFTAPPM DNFYGYDYGG GGRGGGGGTP ATEEASTPPY 360
PFSLFGGGF*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5hdg_A | 1e-23 | 7 | 99 | 7 | 110 | Heat shock factor protein 1 |
| 5hdn_A | 1e-23 | 7 | 99 | 7 | 110 | Heat shock factor protein 1 |
| 5hdn_B | 1e-23 | 7 | 99 | 7 | 110 | Heat shock factor protein 1 |
| 5hdn_C | 1e-23 | 7 | 99 | 7 | 110 | Heat shock factor protein 1 |
| 5hdn_D | 1e-23 | 7 | 99 | 7 | 110 | Heat shock factor protein 1 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 340 | 347 | GGRGGGGG |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Guan Q,Yue X,Zeng H,Zhu J
The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
Plant Cell, 2014. 26(1): p. 438-53
[PMID:24415771]
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