PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 406aa MW: 45178.4 Da PI: 5.8869

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g005890.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.7e-16	22	67	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WTt Ed +l ++vk++G g+W+++ r g+ R++k+c++rw+ Solyc12g005890.1.1 22 KGPWTTTEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWRR 67 79******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.251	17	73	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-17	19	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.22E-14	21	79	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-10	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-14	22	67	IPR001005	SANT/Myb domain
CDD	cd00167	2.95E-10	24	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MAPSGGGVNK NNGGGTRQVL KKGPWTTTED AILMEYVKKH GEGNWNAVQR NSGLMRCGKS 60 CRLRWRRQRA GLPIYPQDIQ PQNYQQDQNQ QHSTNIPSPF DNHQNSNYNN NSPLSLLDIF 120 NPSTMKPSRN IIPHQYQFNN NPSSPFLTNT NNINNQVKFF HDPRVSLSLT LASSMKNSQL 180 SSIVAPVPNN FSQRYSSSMP VPPLQHTYPN FTTTTRPYTT ISSNPNGLIL GMGIEHRSIP 240 SSVPRTTSTS SDHVDNNYTI NHGLSRGNSG LLEDLLEESH TLTRGEKIEE NCPIENEDNN 300 KGKLVWEEYG LTEEAADAIF TEESTYNFSH NHSEDSSSPH SSSGITTKEA SLENIGNQVD 360 DDIMRFLDNF PLGVPVPDWC DDQQNTSNGQ SFECDQIQLS SKSSS*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MAPSGGGVNK NNGGGTRQVL KKGPWTTTED AILMEYVKKH GEGNWNAVQR NSGLMRCGKS  60
CRLRWRRQRA GLPIYPQDIQ PQNYQQDQNQ QHSTNIPSPF DNHQNSNYNN NSPLSLLDIF  120
NPSTMKPSRN IIPHQYQFNN NPSSPFLTNT NNINNQVKFF HDPRVSLSLT LASSMKNSQL  180
SSIVAPVPNN FSQRYSSSMP VPPLQHTYPN FTTTTRPYTT ISSNPNGLIL GMGIEHRSIP  240
SSVPRTTSTS SDHVDNNYTI NHGLSRGNSG LLEDLLEESH TLTRGEKIEE NCPIENEDNN  300
KGKLVWEEYG LTEEAADAIF TEESTYNFSH NHSEDSSSPH SSSGITTKEA SLENIGNQVD  360
DDIMRFLDNF PLGVPVPDWC DDQQNTSNGQ SFECDQIQLS SKSSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g005890.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212766	0.0	Solanum lycopersicum DNA sequence from clone LE_HBa-90D9 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060875.1	0.0	transcription factor MYB101-like
TrEMBL	A0A3Q7J2K4	0.0	A0A3Q7J2K4_SOLLC; Uncharacterized protein
STRING	Solyc12g005890.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	1e-24	myb domain protein 101

Link Out ? help Back to Top
Phytozome	Solyc12g005890.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]