PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 234aa MW: 27158.8 Da PI: 7.6376

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g005640.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.9e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ +v+++G +W+ ++ g+ R++k+c++rw++yl Solyc12g005640.1.1 15 KGTWTLEEDKKLAAYVNKYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 62 799***************99**********************97 PP
2	Myb_DNA-binding	51.2	2.9e-16	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eEd+++ +++++ G++ W++Ia +++ gR+++++k++w++ Solyc12g005640.1.1 68 RGNYTREEDQIIMKLHAEIGNK-WSAIAIHLP-GRSDNEIKNHWHT 111 899*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.577	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.02E-30	12	109	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-11	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	16	69	IPR009057	Homeodomain-like
CDD	cd00167	1.66E-8	17	62	No hit	No description
PROSITE profile	PS51294	25.539	63	117	IPR017930	Myb domain
SMART	SM00717	6.0E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-15	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.57E-9	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-25	70	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MARIRCYDKK SGLKKGTWTL EEDKKLAAYV NKYGCWNWRQ LPKFAGLSRC GKSCRLRWLN 60 YLRPNIKRGN YTREEDQIIM KLHAEIGNKW SAIAIHLPGR SDNEIKNHWH TSLKKRSKHE 120 LTISNGKKRE ASNVNQKSDE DQNITPNESY SEVSPCVTID QNMEDIMDGK CEMIQEKSFE 180 ECIGNFWTEP FLIDSFNSTT NNNTEFCVPL EVEYGLFISP FSPIMCYDEF LCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-28	13	116	5	107	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g005640.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209533	0.0	Solanum lycopersicum DNA sequence from clone LE_HBa-140M1 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252033.1	1e-176	transcription factor MYB14-like
TrEMBL	A0A3Q7JR50	1e-174	A0A3Q7JR50_SOLLC; Uncharacterized protein
STRING	Solyc12g005640.1.1	1e-175	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	4e-54	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Solyc12g005640.1.1
Entrez Gene	101255770

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]