PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 155aa MW: 17369.1 Da PI: 10.2848

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g073060.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00094	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k+F++ L H +H Solyc11g073060.1.1 36 FACKTCNKRFPSFQALGGHRTSH 58 78**********99998888777 PP
2	zf-C2H2	13.6	0.00019	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg+ F L H+r+H Solyc11g073060.1.1 75 HKCSICGMEFALGQALGGHMRRH 97 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.31E-8	36	97	No hit	No description
SMART	SM00355	0.17	36	58	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.889	36	63	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.4E-11	36	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	38	58	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.5E-4	73	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-9	74	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	75	97	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.972	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MTTMKRSRED NGQVEAEAMA NCALMLLSRL NNNNDFACKT CNKRFPSFQA LGGHRTSHNK 60 KPKLLGETNQ KSKVHKCSIC GMEFALGQAL GGHMRRHRDE INKVTSHEKT IIPILHSSKR 120 ISIFGVNLNI TPNVDDLKLW PIEEAPSPVL RIFF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g073060.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251306.1	1e-112	zinc finger protein ZAT11-like
Swissprot	Q9SLD4	7e-27	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A3Q7J257	1e-109	A0A3Q7J257_SOLLC; Uncharacterized protein
STRING	Solyc11g073060.1.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	2e-29	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Solyc11g073060.1.1
Entrez Gene	101261583

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]