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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g072600.1.1 | ||||||||
Common Name | LOC100736472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 482aa MW: 53069.1 Da PI: 7.1418 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 159 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Solyc11g072600.1.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-9 | 159 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-16 | 159 | 217 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-32 | 160 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 160 | 216 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-11 | 160 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-17 | 160 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-6 | 251 | 295 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.20E-13 | 251 | 296 | No hit | No description |
SMART | SM00380 | 1.1E-12 | 252 | 300 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MMLDLNLNAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAGD MFAFNFDILK 60 VGGGGSGSGG GETRRSCSNN DDEEGYDENR SDFVTQQLFP MDNNAELNRT HTSRRPDWVD 120 PSVDPPNTVS FREVQQMGRL QQQQQPVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFNLSDY EEDMKQMKNL SKEEFVHVLR 240 RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKAYDKA AIKCNGREAV TNFEPSAYEG 300 EINSNPQSEG SQQDLDLNLG IATSSPKEVE RSSSFQYHPY DMQEASKSQM DKSGSPIVGS 360 SHYKALPAVT SEQAHLWNGA YSNLIPNYEE RVSGKRIDVG TSHGHPNWAM QMHSQVGTTP 420 LSMFSAAASS GFSTPATTAS ASQISGPNNP NTLNLSFASY SSPSTNTAQY YYQIRPQLPP 480 P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16450 | 0.0 | fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g072600.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ586953 | 0.0 | Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010313188.1 | 0.0 | AP2 transcription factor SlAP2d isoform X1 | ||||
Swissprot | Q9SK03 | 1e-109 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A3Q7J1X4 | 0.0 | A0A3Q7J1X4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g072600.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 1e-106 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g072600.1.1 |
Entrez Gene | 100736472 |
Publications ? help Back to Top | |||
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