PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g072210.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 481aa    MW: 54066 Da    PI: 6.4085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g072210.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000595477123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        + C  Cgk Fs+   L  H+++ H
  Solyc11g072210.1.1 54 HICCECGKEFSSGKALGGHMSSaH 77
                        68******************9988 PP
2zf-C2H213.10.00029126145221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C++C+k F++k +L  H+r
  Solyc11g072210.1.1 126 SCEICHKNFPSKKSLFGHMR 145
                         6******************8 PP
3zf-C2H215.45.2e-05344366123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ Cgk+F ++  L  H ++H
  Solyc11g072210.1.1 344 YKCNVCGKMFATHQALGGHRSSH 366
                         9***************9999998 PP
4zf-C2H213.40.00023425447123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k F++   L  H+r+H
  Solyc11g072210.1.1 425 HKCKFCDKIFPTGQALGGHQRSH 447
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-75276No hitNo description
PROSITE profilePS501579.645482IPR007087Zinc finger, C2H2
PfamPF139127.8E-85477IPR007087Zinc finger, C2H2
SMARTSM003550.385477IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805677IPR007087Zinc finger, C2H2
SuperFamilySSF576673.8E-7120147No hitNo description
PROSITE profilePS501579.66125152IPR007087Zinc finger, C2H2
SMARTSM003550.024125147IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-6127149IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4343368IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.448344371IPR007087Zinc finger, C2H2
PfamPF139123.0E-7344367IPR007087Zinc finger, C2H2
SuperFamilySSF576678.36E-10344366No hitNo description
SMARTSM003550.011344366IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
SuperFamilySSF576678.36E-10420447No hitNo description
PfamPF139129.2E-9424448IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868425452IPR007087Zinc finger, C2H2
SMARTSM003550.018425447IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280427447IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEAEDDQENN GSCEKGLSSS NLKVKINLKL KKDKDESRGD EEKNMLLMKQ KKDHICCECG  60
KEFSSGKALG GHMSSAHVQA NQRLEESLKK KKSLIKRSRF DDDDDDDDEE EVVLEEEEEM  120
GGVVVSCEIC HKNFPSKKSL FGHMRCHPDR EWRGMKPPGK KISKSKGFGE ARFEDVNEGF  180
EDRFASLRDE EEEDGGGGRG VRFNVVELPP LKDWGAKDRR GRSPLKRSVS STIMDDDKEL  240
HDAVQQLINL VNGNVNNNNN NNKNRSEVMM SSSNSVGNAP KEAAFRDLKD KSKKKGVVID  300
DTKEKNREET KKRKREKEKE LVKFDPGQDL VPSPVLKKSV EVKYKCNVCG KMFATHQALG  360
GHRSSHNKLK ISIENTIDEI KGRNDEENNN NTQGDGQLGN QEITNYGNII INDQYGSNNN  420
NNNVHKCKFC DKIFPTGQAL GGHQRSHLTN NQEESSSQNA SKVLDFDLNE LPHLDDDTSL  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292314KKKGVVIDDTKEKNREETKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g072210.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019066511.10.0zinc finger protein ZAT9-like
TrEMBLA0A3Q7J1A40.0A0A3Q7J1A4_SOLLC; Uncharacterized protein
STRINGSolyc11g072210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-16C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]