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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc11g071810.1.1 |
| Common Name | fasciated, LOC100191118 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
YABBY |
| Protein Properties |
Length: 178aa MW: 19906.6 Da PI: 9.6948 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc11g071810.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 232.8 | 8.4e-72 | 10 | 171 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94
sse+vCy+qCnfCntilavsvP + ++++vtvrCGhC+++lsvn+ q+l+ ++ ++l+ ++ + +++++n+k + ++++s+s+
Solyc11g071810.1.1 10 SPSSERVCYLQCNFCNTILAVSVPCSNMLTLVTVRCGHCANMLSVNIGSLIQALPLQDV--QKLQRQQYTNVENNSSNYKAYGSSSSSSSK 98
5689****************************************************996..556666677777777777777666666665 PP
YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++ ++ + + p++ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
Solyc11g071810.1.1 99 FNRYSS--IVSPQIEPKI-PSIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 171
555533..3334444554.46*****************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 178 aa
Download sequence Send
to blast |
MSFDMTFSSS PSSERVCYLQ CNFCNTILAV SVPCSNMLTL VTVRCGHCAN MLSVNIGSLI 60
QALPLQDVQK LQRQQYTNVE NNSSNYKAYG SSSSSSSKFN RYSSIVSPQI EPKIPSIRPP 120
EKRQRVPSAY NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLEGNK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
| Function -- GeneRIF ? help
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- Studies indicate that the fruit shape genes SUN (EU491503) OVATE, and FASCIATED (AK248039) belong to IQD/SUN, OFP and the YABBY gene family, respectively.
[PMID: 23371549]
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| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Cong B,Barrero LS,Tanksley SD
Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication.
Nat. Genet., 2008. 40(6): p. 800-4
[PMID:18469814] - Huang Z,Van Houten J,Gonzalez G,Xiao H,van der Knaap E
Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato.
Mol. Genet. Genomics, 2013. 288(3-4): p. 111-29
[PMID:23371549] - Sacharowski SP, et al.
SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
Plant Cell, 2015. 27(7): p. 1889-906
[PMID:26106148]
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