PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc11g069340.1.1 | ||||||||
Common Name | LOC101256158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 922aa MW: 100708 Da PI: 4.9056 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1.1e-08 | 109 | 136 | 1 | 27 |
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt lC++f+r+ C++G++C++aHg+ Solyc11g069340.1.1 109 WKTTLCSYFRRNDgSCSHGESCRYAHGE 136 8**********756************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-13 | 102 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.44E-7 | 106 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 108 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00360 | 0.0074 | 198 | 265 | IPR000504 | RNA recognition motif domain |
CDD | cd00590 | 1.57E-8 | 199 | 264 | No hit | No description |
Gene3D | G3DSA:3.30.70.330 | 4.5E-7 | 202 | 264 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 1.49E-8 | 202 | 281 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 43.502 | 328 | 921 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 2.91E-47 | 331 | 356 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.91E-47 | 388 | 491 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.91E-47 | 566 | 683 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 2.3E-63 | 580 | 683 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 5.0E-10 | 627 | 685 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 3.58E-7 | 629 | 683 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 2.3E-63 | 800 | 859 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 3.7E-8 | 806 | 855 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 2.91E-47 | 807 | 860 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
PROSITE pattern | PS01230 | 0 | 815 | 847 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 2.3E-63 | 896 | 921 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.91E-47 | 905 | 920 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001510 | Biological Process | RNA methylation | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 922 aa Download sequence Send to blast |
MSTETVNPEL NGEESSEKLH SPVIVKSELN GDDSSEHLQL PETLKTELNG EDSSEQLHSS 60 AIVKPELNGD ESSELVKLTE ALAEPTEKRK REGSETVTET EQKQQNPLWK TTLCSYFRRN 120 DGSCSHGESC RYAHGESELR VRPDNTWDPT SDRAKKMAKT AADDDGEKAE DKEEKCNDVM 180 MTEALDDDEC SSVSGLSKCL VNLPMKWSSD NLRCFLKEHG VTFKSAKKKK GMAVGFATFE 240 NAEQVKTAVK ELDGKPAGNK ILKVGDIIPR AFERKGNSAM SSFRTNQQGE KQTEAGDGLD 300 LTKISEETEA EDPVTSDSVL KGRCVRDVVT PLAKMPYADQ LEQKKSSLTR TLKTLTRNAR 360 KACPNGVPLP EWILKAREIG GLPCELEGII ESPLITGYRN KCEFSAGFSV LGKPTVGFQL 420 GNFREGVTAV EEPVDCPNVS RIACKYAAIF QEFLQQSTLP IWNRLNNTGF WRQLTVREGR 480 MPGKNVEVEN PSANISEVML IVQVSTLTFD DALVNDELQG LAKAFAMGAS SASPTLPLTA 540 LVVQDHTGIS NVAPADAPLR VLPFSREESY SELHADNAVA EAKIHDFING LKFCISPTAF 600 FQVNTLAAEK LYSLAGDWAS LGPDTLLFDV CCGTGTIGLT LANRVGMVVG IEMNASAVSD 660 AQRNAEINGI KNCRFICGKA EDVMGSVLKE YLASPAKVDG LLDIEEKKNQ ENTTSTEKTD 720 SIVNASKTDG ESSTGSENGK SMCIDQDTTP TENMYSTDRA AEPEEKTGLE CTNGKSLSES 780 SADDTTEPAT QLKKCSSDNL TTPVQHFKNV VAIVDPPRAG LHPTVIKLLR TNSRLRRLVY 840 ISCNPESLVA NAIELCTPSP DESEKGDNRN NRLWRKMSSA TLARHRTKSM PNSEPFKPVK 900 AMAVDLFPHS PHCELVMLLE R* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 3e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 3e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 3e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 3e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 3e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq0_A | 3e-18 | 584 | 690 | 266 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 2e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 3e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 3e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zth_A | 3e-18 | 584 | 690 | 266 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.18591 | 0.0 | fruit| leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc11g069340.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC212437 | 0.0 | Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251126.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A3Q7J096 | 0.0 | A0A3Q7J096_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g069340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8074 | 8 | 8 |
Representative plant | OGRP6088 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc11g069340.1.1 |
Entrez Gene | 101256158 |
Publications ? help Back to Top | |||
---|---|---|---|
|