PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g069030.1.1
Common NameLOC543703
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 316aa    MW: 35518.5 Da    PI: 8.298
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g069030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd +l+d ++++G+  +W + +++ g++R++k+c++rw++yl
  Solyc11g069030.1.1 14 RGPWSPEEDAKLKDFIHKFGTAgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                        89******************99*************************97 PP
2Myb_DNA-binding36.11.5e-1169111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ +Ed  + ++ +  G++ W+ Ia+ ++ gRt++++k++w++
  Solyc11g069030.1.1  69 GDFSDDEDRVICNLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.036962IPR017930Myb domain
SuperFamilySSF466897.59E-2611109IPR009057Homeodomain-like
SMARTSM007171.7E-111364IPR001005SANT/Myb domain
PfamPF002491.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-231569IPR009057Homeodomain-like
CDDcd001672.36E-91662No hitNo description
PROSITE profilePS5129421.57563117IPR017930Myb domain
SMARTSM007173.4E-1067115IPR001005SANT/Myb domain
PfamPF002494.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2370117IPR009057Homeodomain-like
CDDcd001672.77E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000003anatomywhole plant
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009049anatomyinflorescence
PO:0009060anatomycalyx
PO:0020049anatomyleaflet
PO:0020139anatomyleaf midvein
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KFGTAGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRVIC NLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
IIPNNNSSSS YNNNNNNYQK KLPYFPSTSL HQAQQNLGPF ITGPEQPIII PAAQQNNLFT  180
NNNNNLMMIA NNLQNYPNFG ATNYNLQNYP NFGEVASCSS SDGSQMSFGT NKDIINIKRE  240
EIMSFGGHHD GAIYEEINNN QQFNFGYFGN TMQEIATSCC TNGNSGSTTN SSNNFLLYNN  300
DENCNKSNEI GMFYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g069030.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4261740.0Lycopersicon esculentum blind mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234643.10.0blind
TrEMBLQ8W1R80.0Q8W1R8_SOLLC; Blind
STRINGSolyc11g069030.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-75myb domain protein 36
Publications ? help Back to Top
  1. Schmitz G, et al.
    The tomato Blind gene encodes a MYB transcription factor that controls the formation of lateral meristems.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(2): p. 1064-9
    [PMID:11805344]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]