PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g068750.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 453aa MW: 51631.1 Da PI: 9.1611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.6 | 1.3e-49 | 82 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrF Ptdeel+++yLkkkveg++ + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk++ Solyc11g068750.1.1 82 MFPGFRFCPTDEELISYYLKKKVEGSDKCV-EVISEVEIWKHEPWDLPgKSIVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKER 171 579************************777.99***************878888999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++ +g+k+tLvf+ grapkg++t+W+mhey + Solyc11g068750.1.1 172 NVKS-GTNIIGTKRTLVFHIGRAPKGQRTQWIMHEYCM 208 ****.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-56 | 79 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.679 | 82 | 226 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 84 | 207 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MIHPFKFFKY FFLTRQSDLY KLLKYCYFLG LKKLEKKFVF GVMEDEDLLG CNSEKKNGEI 60 IEKTKISNSN GVEISVATAS TMFPGFRFCP TDEELISYYL KKKVEGSDKC VEVISEVEIW 120 KHEPWDLPGK SIVQSDNEWF FFSPRGRKYP NGSQSKRATE SGYWKATGKE RNVKSGTNII 180 GTKRTLVFHI GRAPKGQRTQ WIMHEYCMTA NPLYQDSMVV CRLRKNNEFH LNDTPGNQRN 240 DLAVTNGTVD LSRAVQLNGL GLINGGECCS KEASSSFSSH SVEQIESGSE SDKLNKELPQ 300 HHSSSHWKDC DEEDCFADIM KDDIIKLDDS SYKAKHNLLP TITRKLESST KSPTSQEAQN 360 LMSNRLPFQG TANRRLKLQT EKVPRGVETL ELHEANKKNI HARGISRRLI NIAPVKRMKQ 420 WSIPLLLISL MLLIVLLCLF GVPQPVKWHY SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-43 | 73 | 225 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-43 | 73 | 225 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-43 | 73 | 225 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-43 | 73 | 225 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
3swm_B | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
3swm_C | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
3swm_D | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
3swp_A | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
3swp_B | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
3swp_C | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
3swp_D | 5e-43 | 73 | 225 | 11 | 167 | NAC domain-containing protein 19 |
4dul_A | 5e-43 | 73 | 225 | 8 | 164 | NAC domain-containing protein 19 |
4dul_B | 5e-43 | 73 | 225 | 8 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g068750.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884184.1 | 0.0 | NAC domain-containing protein 40 | ||||
TrEMBL | A0A3Q7JPF0 | 0.0 | A0A3Q7JPF0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 | Representative plant | OGRP10249 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 8e-77 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g068750.1.1 |
Publications ? help Back to Top | |||
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