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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc11g064990.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 252aa MW: 29828.8 Da PI: 7.7717 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc11g064990.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 117.6 | 7.5e-37 | 24 | 116 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+y++++d++ ++++sw e +n+fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgFkk+ e+ weF++++Fkkg+k+
Solyc11g064990.1.1 24 FLTKTYQLVDDPSSDHIVSWGEYENTFVVWRPPEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPER---------WEFANEHFKKGQKH 105
9****************************************************************999.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i+r++s+
Solyc11g064990.1.1 106 LLCEIQRRRST 116
********975 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MASSSTCGDQ EMIFTMQKAM VAPFLTKTYQ LVDDPSSDHI VSWGEYENTF VVWRPPEFAK 60 DLLPNYFKHN NFSSFVRQLN TYGFKKIVPE RWEFANEHFK KGQKHLLCEI QRRRSTPQQL 120 HHLTPYQEHI TRSIYHQEIQ NPSSTVDHDI LLALTQDNER LRKRNIVLLS ELTRMKNLYN 180 DIIYFIQNHV KPVEEKSRVF LLNGGLNHHH RQVHNEDHEE PKSDKVKLFG VSLCGKKRLY 240 HERIDQEELE C*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 6e-23 | 21 | 116 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 9e-23 | 21 | 113 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-23 | 21 | 113 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-23 | 21 | 113 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |