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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc11g064800.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
SRS |
Protein Properties |
Length: 380aa MW: 40678.9 Da PI: 8.4117 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc11g064800.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 218.2 | 1.9e-67 | 135 | 303 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsal 86
+++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa++rrerq + a++++++++++ +++++k++r +s++++++
Solyc11g064800.1.1 135 STTCQDCGNQAKKDCTHRRCRTCCKSRGYDCNTHVKSTWVPASRRRERQLMGASTTTTTTNRNvvaagsssqSTSSAKKPRLVNSQTTTTA 225
679*********************************************99999988887777789999988777788899999999999** PP
DUF702 87 sstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
s+t++s+++++++++tss lP +v+++avf+cvrv+svd+ge+e+aYq++v+igGhvfkG+LydqGl+e
Solyc11g064800.1.1 226 SHTSTSNNTPPRSFDTSSshqdasfkgsLPGQVRAPAVFKCVRVTSVDEGEDEYAYQAVVKIGGHVFKGFLYDQGLDE 303
****************999********************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MWSASASSRQ MQINYGLQPA EMGMFVVHPA SFHQNHENTI NFDPHGNSND NSNLSNTNTS 60 LGVGVGVIPL LTATPLSNMV TFDDQDLVRN NRGGNNGGFQ FFSNEQQQNS TTNYNTKNST 120 SSNNIILGGG GSISSTTCQD CGNQAKKDCT HRRCRTCCKS RGYDCNTHVK STWVPASRRR 180 ERQLMGASTT TTTTNRNVVA AGSSSQSTSS AKKPRLVNSQ TTTTASHTST SNNTPPRSFD 240 TSSSHQDASF KGSLPGQVRA PAVFKCVRVT SVDEGEDEYA YQAVVKIGGH VFKGFLYDQG 300 LDEPKDNNNF PNLSDLHLGA VATNEHLYAA STSGGGGLLG GGSNYGQYIV ICDLQLSTAK 360 VAFMPFLLGC IEPLKTLKK*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G12330.4 | 8e-69 | Lateral root primordium (LRP) protein-related |