PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g062060.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 262aa    MW: 29848.3 Da    PI: 6.8618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g062060.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-0596115120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Solyc11g062060.1.1  96 FSCPLCFKTFNRYNNMQMHM 115
                         89*****************9 PP
2zf-C2H215.16.8e-05180202123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  Solyc11g062060.1.1 180 FMCRKCGKAFAVRGDWRTHEKNC 202
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.11E-592118No hitNo description
PROSITE profilePS501579.6696123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-596115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6196118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-6162200No hitNo description
Gene3DG3DSA:3.30.160.606.7E-6176200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808180200IPR007087Zinc finger, C2H2
SMARTSM0035549180200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEVDHNNSKE NKDQESFISN NFGDQESVSV ALQLGLPNPS SHDDVISRIN SSTNKEEVQE  60
EEEEVTLANI GYSSTLHKGQ YWIPTPAQIL IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS  120
QYRKGPESLR GTQPTAMLRL PCFCCSPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF  180
MCRKCGKAFA VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG HEAYGIDCLE  240
EEDEPASEIE QDNDHDHDPS N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.225800.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g062060.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250873.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-130ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3Q7IXN90.0A0A3Q7IXN9_SOLLC; Uncharacterized protein
STRINGSolyc11g062060.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-130C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]