PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g056650.1.1

Common Name

LOC101263275

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 442aa MW: 48737.1 Da PI: 7.0359

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g056650.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.7e-12	378	423	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L Av+YIk+L+ Solyc11g056650.1.1 378 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 423 689*******************7....688*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	372	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	375	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.08E-11	376	427	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-14	377	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-12	378	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-9	378	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDHSRVEQQP ITSGLTRYRS APSSYFSTLL TTTTPVTGGG CGYARDDFSN LPNSTASSSS 60 TDIEQVFARF VASIGNSNSN SGNFPTNQPI HENPTSNMNV RSDFVVPKQE ITPRLVRHRS 120 SDHSLVSNYQ NQNQHFISPV KREPETLLQS TDHVSASQLN YQSQPQQIEK LNAVTDKPFV 180 FANSASLTPG SSSGGGGNSN LTRYNSSPAG FFAQINIENE YGAIRGIGRY ETGTNAAADT 240 SLSTPKSFKT QVGFSSGKPP ASPRLMAPIS EFGTKVLEEK SMGNEHKNDE HCITDFPMPS 300 WEDSHILSDD FLKTEDIEIE PFSNEDASHN QSSEGLARPP IPLSHHLSLP TSTMEKLLQD 360 SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP NMDKQTNTAD MLDFAVDYIK 420 ELEKQVKILA ERRAKCTCIN K*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDHSRVEQQP ITSGLTRYRS APSSYFSTLL TTTTPVTGGG CGYARDDFSN LPNSTASSSS  60
TDIEQVFARF VASIGNSNSN SGNFPTNQPI HENPTSNMNV RSDFVVPKQE ITPRLVRHRS  120
SDHSLVSNYQ NQNQHFISPV KREPETLLQS TDHVSASQLN YQSQPQQIEK LNAVTDKPFV  180
FANSASLTPG SSSGGGGNSN LTRYNSSPAG FFAQINIENE YGAIRGIGRY ETGTNAAADT  240
SLSTPKSFKT QVGFSSGKPP ASPRLMAPIS EFGTKVLEEK SMGNEHKNDE HCITDFPMPS  300
WEDSHILSDD FLKTEDIEIE PFSNEDASHN QSSEGLARPP IPLSHHLSLP TSTMEKLLQD  360
SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP NMDKQTNTAD MLDFAVDYIK  420
ELEKQVKILA ERRAKCTCIN K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16970	0.0	flower\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g056650.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212792	7e-22	Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004250857.1	0.0	transcription factor bHLH81
TrEMBL	A0A3Q7JMX0	0.0	A0A3Q7JMX0_SOLLC; Uncharacterized protein
STRING	Solyc11g056650.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39
Representative plant	OGRP511	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	2e-47	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc11g056650.1.1
Entrez Gene	101263275

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]