PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 303aa MW: 34736.5 Da PI: 6.0732

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g045690.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.8	1.2e-17	42	89	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa +++a+++++ Solyc11g045690.1.1 42 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALSYDRAARSMR 89 88****.******933...5*********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.17E-25	41	102	No hit	No description
PROSITE profile	PS51032	19.467	41	103	IPR001471	AP2/ERF domain
SMART	SM00380	4.1E-26	41	109	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-24	42	102	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-16	42	89	IPR016177	DNA-binding domain
PRINTS	PR00367	4.0E-8	42	53	IPR001471	AP2/ERF domain
Pfam	PF00847	4.9E-11	42	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-8	64	80	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDLIKSSTSS STSTSRKPRK NNGTSNQSVK QKTEEQQSNF RYLGVRRRPW GRYAAEIRDP 60 NTKERHWLGT FDTAEEAALS YDRAARSMRV NNKSNKPNRT NFVYSDMPHG YSVTCIISPD 120 DQYQHHHHHH HQQQQQQQQQ QQQQQQQQHL LVFDQTENAP APNADYGAHF SQFSLSNMNN 180 VGGDSCDGVE FVSQQYYNPN YDMHMEDCYR YNSKNKTTTE LPPLPEDITS SGNYYNLNSE 240 FPNSEMGYDS KNEMIIGTNN EYGASTMTTT TAGNFSYFGF DDCLQPLQDD PSNNNSLGYW 300 FS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	6e-17	42	89	3	51	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g045690.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC247070	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence
GenBank	AC247072	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence
GenBank	AC247105	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence
GenBank	AC247114	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence
GenBank	AC247121	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence
GenBank	AC247131	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010313171.1	0.0	ethylene-responsive transcription factor LEP-like
TrEMBL	A0A3Q7IWY7	0.0	A0A3Q7IWY7_SOLLC; Uncharacterized protein
STRING	Solyc11g045690.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5383	19	34
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	2e-38	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc11g045690.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]