PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 987aa MW: 108349 Da PI: 5.1778

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g045350.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Solyc11g045350.1.1 595 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 646 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	578	666	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	599	646	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-22	883	970	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-24	886	968	No hit	No description
PROSITE profile	PS51745	20.035	886	968	IPR000270	PB1 domain
Pfam	PF00564	2.3E-17	886	967	IPR000270	PB1 domain
SMART	SM00666	2.5E-23	886	968	IPR000270	PB1 domain
CDD	cd06407	4.18E-30	887	967	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MERGVDFWAS PKGQMEGVAS FDASTRSSNV DSFNNVMEIM NLDAYAGWCT SPSAAEHMLA 60 SYAAFSPINH MSQSYAPFEG LSYTEQNSGA FPPMDANMVV SNHDGGEKMM FGQTDDQLHF 120 MVDSVDGEDG LGAKRSRRSS QPSDGADIGN SMIPRSPSQP LAERMLRALA MFKESSAAGI 180 LAQVWIPMKN GDQYVLSTCE QPYLLDQVLS GYREVSRKFT FDTEIKPGAI PGLPGRVFSS 240 RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKRN 300 FDLEMDHVCQ ALQAVNLRST APPRLHSQNL SNNQKDALAE ITDVLRAVCH AHKLPLALTW 360 IPCNVTEGEG DEPIRVRARG CNTSLNEKCV LCVEDTACYV SDKEMQGFVH ACMEHFLEEG 420 EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF 480 FLPTSMKGST EQQLLLNNLS GTMQRICKSL RTVADVELVG QDTKFGLQDG SVPNLPPIAL 540 SRKNFQHSLD SNSNSVNEAP LGACDSKSAG THADDSHEQT MTGSRRQIEK KRSTAEKHVS 600 LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV 660 QGVEGGLKFD PASGGLVPAG SITQDFDAQR SIFFPFKDVS VKNPTSVFQD TVSVPSSSGN 720 DKENSMVKME EDFFADGNQL SQSNHVNTSS FKEVTKSSIE VSGYCYESKL PLTDSGNASL 780 GPFLSKGGCR RWGLNNDTLD NVDCQFTSQC SYSMAVGSDV DSKMKEDNEM DGDGGVIEHN 840 QASSSAMTDS SNGSESMING SSSSTHSRGA EKHSKIEVNC GDNGSTITVK ATYKEDTIRF 900 KFDLSAGCFQ LYEDIAKRFK LHTETFQLKY LDEEEEWVML VNDADLHECL EILDFSGGRT 960 VKFLVRDTPC ALGSSGSSNC FLASGS*

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MERGVDFWAS PKGQMEGVAS FDASTRSSNV DSFNNVMEIM NLDAYAGWCT SPSAAEHMLA  60
SYAAFSPINH MSQSYAPFEG LSYTEQNSGA FPPMDANMVV SNHDGGEKMM FGQTDDQLHF  120
MVDSVDGEDG LGAKRSRRSS QPSDGADIGN SMIPRSPSQP LAERMLRALA MFKESSAAGI  180
LAQVWIPMKN GDQYVLSTCE QPYLLDQVLS GYREVSRKFT FDTEIKPGAI PGLPGRVFSS  240
RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKRN  300
FDLEMDHVCQ ALQAVNLRST APPRLHSQNL SNNQKDALAE ITDVLRAVCH AHKLPLALTW  360
IPCNVTEGEG DEPIRVRARG CNTSLNEKCV LCVEDTACYV SDKEMQGFVH ACMEHFLEEG  420
EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF  480
FLPTSMKGST EQQLLLNNLS GTMQRICKSL RTVADVELVG QDTKFGLQDG SVPNLPPIAL  540
SRKNFQHSLD SNSNSVNEAP LGACDSKSAG THADDSHEQT MTGSRRQIEK KRSTAEKHVS  600
LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV  660
QGVEGGLKFD PASGGLVPAG SITQDFDAQR SIFFPFKDVS VKNPTSVFQD TVSVPSSSGN  720
DKENSMVKME EDFFADGNQL SQSNHVNTSS FKEVTKSSIE VSGYCYESKL PLTDSGNASL  780
GPFLSKGGCR RWGLNNDTLD NVDCQFTSQC SYSMAVGSDV DSKMKEDNEM DGDGGVIEHN  840
QASSSAMTDS SNGSESMING SSSSTHSRGA EKHSKIEVNC GDNGSTITVK ATYKEDTIRF  900
KFDLSAGCFQ LYEDIAKRFK LHTETFQLKY LDEEEEWVML VNDADLHECL EILDFSGGRT  960
VKFLVRDTPC ALGSSGSSNC FLASGS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.9100	0.0	callus\| flower\| fruit\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g045350.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009397	1e-06	Solanum lycopersicum genomic DNA, chromosome 8, complete sequence, clone: C08SLm0010D08

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004250776.1	0.0	protein NLP9
Refseq	XP_010313114.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A3Q7IXG9	0.0	A0A3Q7IXG9_SOLLC; Uncharacterized protein
STRING	Solyc11g045350.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Solyc11g045350.1.1
Entrez Gene	101260397

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]