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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc11g032100.1.1 |
| Common Name | LOC544256 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 202aa MW: 23104.8 Da PI: 6.936 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc11g032100.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 79.1 | 3e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
Solyc11g032100.1.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
79*********************************************965 PP
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| 2 | K-box | 57.8 | 4.8e-20 | 84 | 174 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
++++ ++e++ Lk+ei+ Lq+ + + G + ++++l eL++Le+ Le + +iRs K+++++++i+ l++ke l+ +nk+L+ k++e
Solyc11g032100.1.1 84 KDTQPLDPKEEINMLKNEIDVLQKGLSYMYGGGAGTMTLDELHSLEKYLEIWMYHIRSAKMDIMFQEIQLLKNKEGILEAANKYLQDKIDE 174
4555566789******************************************************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0048364 | Biological Process | root development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60
GSMQGLIERY IKSTKGVEVA EEAKDTQPLD PKEEINMLKN EIDVLQKGLS YMYGGGAGTM 120
TLDELHSLEK YLEIWMYHIR SAKMDIMFQE IQLLKNKEGI LEAANKYLQD KIDEQYTVTN 180
MTQNLTDFQC PLTVQNEIFQ F*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in a punctate pattern from the globular stage to the torpedo stage. {ECO:0000269|PubMed:11855641}. |
| Uniprot | TISSUE SPECIFICITY: Preferentially expressed in roots (PubMed:7549482). In root meristem, expressed in external cells of columella, lateral root cap and atrichoblasts. In mature root, expressed in the central cylinder (PubMed:11855641). Expressed in leaf vasculature, young floral meristems and nectaries (PubMed:18203871). {ECO:0000269|PubMed:11855641, ECO:0000269|PubMed:18203871, ECO:0000269|PubMed:7549482}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY098737 | 0.0 | Lycopersicon esculentum TAGL12 transcription factor mRNA, complete cds |
| Publications
? help Back to Top |
- Busi MV, et al.
MADS-box genes expressed during tomato seed and fruit development.
Plant Mol. Biol., 2003. 52(4): p. 801-15
[PMID:13677468] - Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
Plant Physiol., 2004. 136(1): p. 2621-32
[PMID:15375207] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Pacheco-Escobedo MA, et al.
Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
Ann. Bot., 2018.
[PMID:27358290] - García-Cruz KV, et al.
The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
Ann. Bot., 2018.
[PMID:27474508]
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