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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc11g020670.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
TCP |
Protein Properties |
Length: 375aa MW: 39922 Da PI: 8.0452 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc11g020670.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 131.7 | 7.1e-41 | 82 | 196 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92
++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s +ss+ + s++ +++
Solyc11g020670.1.1 82 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSTRSSGTTISAPPSKS 172
5799****************************************************************99987778888877666664444 PP
TCP 93 saa.kskksqksaasalnlakesr 115
+ + s + +a++l ++++ +
Solyc11g020670.1.1 173 APLfIHGASASASAAMLGFHHHLS 196
444444444444444555555333 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0005634 | Cellular Component | nucleus |
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MEFMEPHRKK LGDASNHHQH NQEETPSSLQ LISPHQSQRD PSTPGSNHPH GPFMGSISMQ 60 SISPPSTNSS TPNNNTISTL KVAKKPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH 120 KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSTRS SGTTISAPPS KSAPLFIHGA 180 SASASAAMLG FHHHLSTANT GFIQDPDENY MKKRFREDTT TSGATSPSPD KPGSDSSKPG 240 SNLIPGQAMW AVAPAGGNVG NGFWMLPVSG GTGSTAVSVG AGQSDHQLWQ YKSSRIGGLE 300 FPGGGRFSPV QLGSMVLQQS HPVQQLGSNM GMLNAYNNNN NNSRVDLGMN LEHHNQTQHQ 360 DSDSGDENHN DSQS*
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Functional Description ? help
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Source |
Description |
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GQ496330 | 0.0 | Solanum lycopersicum TCP transcription factor 12 (TCP12) mRNA, complete cds |