PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g020620.1.1 | ||||||||
Common Name | LOC104644579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 343aa MW: 38747.9 Da PI: 5.4207 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.9 | 1.4e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+++ +r t+ R++g++KK +ELS+LCd++++++i+ + Solyc11g020620.1.1 11 IQDDKKRMKTLVTRKAGLFKKISELSILCDIKACMLIYDE 50 8999*********************************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-18 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.03 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-13 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.12E-19 | 2 | 76 | No hit | No description |
Pfam | PF00319 | 2.7E-13 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGRSKIKVEL IQDDKKRMKT LVTRKAGLFK KISELSILCD IKACMLIYDE GNNNNCEMWP 60 NDPNELINLY KNQPFEGPTK RGKTLSGDEI KVEKDPDSRF DYFENNEKKK ADAIQVEKYP 120 TWDSRFDYLS QKELQNLAGV LENRMENAKG RIELLKSMNG SCSLSHQQQI WDYNNLMNQT 180 TTLSNNNLFQ SNIPISSTVN SMGAGMDYHF CNANYCKMNE SENWYGVGSS LTMMQHNMAN 240 NGIGSSSTIL HLMGDDYGII DSSSTMMLPM GNNEIGSSST MQQPMYQYPF MYNGSTHVIG 300 SSSTMQPPMG QYPFTNNDDS TGILVQVQQC SLWGIIMRLV QL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g020620.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010312953.1 | 0.0 | MADS-box transcription factor 2-like | ||||
TrEMBL | A0A3Q7IUT3 | 0.0 | A0A3Q7IUT3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g020620.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6342 | 12 | 32 |
Representative plant | OGRP3677 | 6 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-15 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g020620.1.1 |
Entrez Gene | 104644579 |
Publications ? help Back to Top | |||
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