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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc11g016910.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
NF-YC |
Protein Properties |
Length: 94aa MW: 10933.4 Da PI: 4.8555 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc11g016910.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 51.3 | 2.5e-16 | 35 | 92 | 2 | 55 |
NF-YC 2 lksfwekq...iekatdfknhel.PlarikkilkadedvkmisaeaPvllskacelfi 55
+++fw++q +ek +fkn+ l ik+i+k+++dv++i++e+Pvll+kac++fi
Solyc11g016910.1.1 35 MEMFWTDQereMEKIDNFKNNLLvSPNHIKNIMKTNKDVRRITSESPVLLAKACDFFI 92
789***99999********887624579*****************************9 PP
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help
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Source |
Description |
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC246917 | 1e-151 | Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence |
GenBank | AC246984 | 1e-151 | Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence |
Publications
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- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] - Qi M, et al.
QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]
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