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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g013480.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 343aa MW: 38288.7 Da PI: 7.9796 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.7e-24 | 110 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsd+++ g +++p+ +a+++ +++ + l+++d +g We+++iyr++++r++lt+GW++Fv++++L +gD+ vF++ Solyc11g013480.1.1 110 FVKILTPSDANNGGGFSVPRFCADSIyprldfeAEPPVQ--NLSIRDIKGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKQLVAGDSAVFMR 198 89*********************999*****86555555..7************************************************4 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 r + +l+v+v+r+ Solyc11g013480.1.1 199 --RtANNQLYVGVRRA 212 ..4488889****996 PP | |||||||
2 | Auxin_resp | 84.3 | 2.6e-28 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 +a++a+ + +Fev +Pr +++ Fvvk+++v+ al+++++vGmR+kma+e edss++ + +Gtv++v ++ W++S+Wr+L+ Solyc11g013480.1.1 257 VAEKAARGVPFEVSCYPRDAWAGFVVKAQEVQMALNMPWTVGMRVKMAVEAEDSSRTACyQGTVSSVILNESGPWRGSPWRMLQ 340 6789999***************************************************99**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.37E-30 | 104 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-31 | 105 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.58E-19 | 109 | 211 | No hit | No description |
SMART | SM01019 | 6.9E-15 | 110 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 110 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-22 | 110 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.9E-26 | 258 | 340 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MQAPTVADRE VDPIVWRAIA GNSVKIPPVG TRVYYFPQGH AEHATFTSPA VMSPGMPAFI 60 LCRVLSVRFL AESDTDEVYA RIFLHPISQS EVDEVTMREE EVVEDEIVSF VKILTPSDAN 120 NGGGFSVPRF CADSIYPRLD FEAEPPVQNL SIRDIKGVAW EFRHIYRGTP RRHLLTTGWS 180 KFVNSKQLVA GDSAVFMRRT ANNQLYVGVR RAIRRNDDSQ KWTSSFLMRE HINNGGSPDV 240 SWGIRKGRMT MEAVAAVAEK AARGVPFEVS CYPRDAWAGF VVKAQEVQMA LNMPWTVGMR 300 VKMAVEAEDS SRTACYQGTV SSVILNESGP WRGSPWRMLQ II* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 5e-64 | 15 | 341 | 23 | 333 | Auxin response factor 1 |
4ldy_B | 5e-64 | 15 | 341 | 23 | 333 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.13201 | 0.0 | fruit| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g013480.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ456923 | 0.0 | Solanum lycopersicum auxin response factor 17 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234237.2 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 1e-111 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A3Q7ISU2 | 0.0 | A0A3Q7ISU2_SOLLC; Auxin response factor | ||||
STRING | Solyc11g013480.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 | Representative plant | OGRP15092 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-109 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g013480.1.1 |