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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc11g013480.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARF |
Protein Properties |
Length: 343aa MW: 38288.7 Da PI: 7.9796 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc11g013480.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 75.4 | 6.7e-24 | 110 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+ltpsd+++ g +++p+ +a+++ +++ + l+++d +g We+++iyr++++r++lt+GW++Fv++++L +gD+ vF++
Solyc11g013480.1.1 110 FVKILTPSDANNGGGFSVPRFCADSIyprldfeAEPPVQ--NLSIRDIKGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKQLVAGDSAVFMR 198
89*********************999*****86555555..7************************************************4 PP
-SS.SEE..EEEEE-S CS
B3 85 dgr.sefelvvkvfrk 99
r + +l+v+v+r+
Solyc11g013480.1.1 199 --RtANNQLYVGVRRA 212
..4488889****996 PP
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2 | Auxin_resp | 84.3 | 2.6e-28 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
+a++a+ + +Fev +Pr +++ Fvvk+++v+ al+++++vGmR+kma+e edss++ + +Gtv++v ++ W++S+Wr+L+
Solyc11g013480.1.1 257 VAEKAARGVPFEVSCYPRDAWAGFVVKAQEVQMALNMPWTVGMRVKMAVEAEDSSRTACyQGTVSSVILNESGPWRGSPWRMLQ 340
6789999***************************************************99**********************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009734 | Biological Process | auxin-activated signaling pathway |
GO:0010208 | Biological Process | pollen wall assembly |
GO:0048830 | Biological Process | adventitious root development |
GO:0052543 | Biological Process | callose deposition in cell wall |
GO:0005634 | Cellular Component | nucleus |
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MQAPTVADRE VDPIVWRAIA GNSVKIPPVG TRVYYFPQGH AEHATFTSPA VMSPGMPAFI 60 LCRVLSVRFL AESDTDEVYA RIFLHPISQS EVDEVTMREE EVVEDEIVSF VKILTPSDAN 120 NGGGFSVPRF CADSIYPRLD FEAEPPVQNL SIRDIKGVAW EFRHIYRGTP RRHLLTTGWS 180 KFVNSKQLVA GDSAVFMRRT ANNQLYVGVR RAIRRNDDSQ KWTSSFLMRE HINNGGSPDV 240 SWGIRKGRMT MEAVAAVAEK AARGVPFEVS CYPRDAWAGF VVKAQEVQMA LNMPWTVGMR 300 VKMAVEAEDS SRTACYQGTV SSVILNESGP WRGSPWRMLQ II*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ456923 | 0.0 | Solanum lycopersicum auxin response factor 17 mRNA, complete cds |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Shi ZH, et al.
Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis. PLoS ONE, 2015. 10(3): p. e0117317 [PMID:25822980] - de Lucas M, et al.
Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] - Wang B, et al.
Fine regulation of ARF17 for anther development and pollen formation. BMC Plant Biol., 2017. 17(1): p. 243 [PMID:29258431] - Wójcik AM,Nodine MD,Gaj MD
miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] - Lin JS, et al.
MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. Front Plant Sci, 2018. 9: p. 68 [PMID:29449855]
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