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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc11g008900.1.1 |
Common Name | LOC101255551 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 434aa MW: 47178.4 Da PI: 8.507 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc11g008900.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 35 | 2.5e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C+++ rtG C++G++C+F+H+p
Solyc11g008900.1.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
6899********************97 PP
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2 | zf-CCCH | 39.2 | 1.2e-12 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C++f++tGtCk+G++CkF+H++
Solyc11g008900.1.1 94 QPECQYFLKTGTCKFGATCKFHHPK 118
799********************96 PP
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3 | zf-CCCH | 38.9 | 1.5e-12 | 140 | 164 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C +++rtG+Ck+G++CkF+H++
Solyc11g008900.1.1 140 ESECAYYMRTGQCKFGSTCKFHHPQ 164
679********************97 PP
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4 | zf-CCCH | 37.9 | 3e-12 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tG Ck+G+ C+F+H++
Solyc11g008900.1.1 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319
5789*********************96 PP
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5 | zf-CCCH | 40.2 | 5.8e-13 | 339 | 365 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++lC f++r+G+Ck+G++CkF H++
Solyc11g008900.1.1 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365
589**********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.483 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-8 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-5 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-5 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-9 | 294 | 319 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 296 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 341 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 343 | 363 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRDSIES GHYPVREGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RIGQPECQYF LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVTLN VMGYPLRPNE SECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP 180 VPSATTPGQL SYPLSRGSFI PGARWQGPSG YTPLIVPQGV VSVPGFAYSG QMGSVSSPEG 240 QGQTAGNNQV YGTSRSSDPV AMGSQAVTSP YRQASGPMGY YALQEENVFP ERPGQPECQF 300 YMKTGDCKFG AVCRFHHPRE RLIPPPDCLL SPIGLPLRPG EPLCIFYSRY GICKFGPSCK 360 FDHPMTVFTY SIAASSATDA PTVQRLLGSS SGTSALNMTS EGLVEAVSTK PRRLSLSETR 420 KMPSGDNNID REG*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Les.2608 | 0.0 | callus| cell culture| flower| fruit| leaf| stem |