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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc11g005120.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 239aa MW: 27791.6 Da PI: 6.9635 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc11g005120.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifs++gkl+ey +
Solyc11g005120.1.1 9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTKGKLFEYTT 59
79***********************************************75 PP
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2 | K-box | 56.4 | 1.3e-19 | 85 | 167 | 14 | 96 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
+ + e++k+k+e+ nL+ ++ +++G++L+s ++ eL++Le+qLe+s++kiR++K ell +q+e+l++ ek+l++en+++ +
Solyc11g005120.1.1 85 RVEQYDEITKMKRETLNLELSLQRYKGDELNSAQYDELNELEKQLENSINKIRARKLELLQQQMENLKRTEKMLEKENHDMCQ 167
445689************************************************************************98755 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.483 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-31 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.91E-41 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.151 | 85 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.0E-19 | 86 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008360 | Biological Process | regulation of cell shape |
GO:0019252 | Biological Process | starch biosynthetic process |
GO:0043068 | Biological Process | positive regulation of programmed cell death |
GO:0048316 | Biological Process | seed development |
GO:0048481 | Biological Process | plant ovule development |
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm |
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST KGKLFEYTTQ 60 PHSMGEIINK YLQTTGASLP IHDHRVEQYD EITKMKRETL NLELSLQRYK GDELNSAQYD 120 ELNELEKQLE NSINKIRARK LELLQQQMEN LKRTEKMLEK ENHDMCQWLM KYEMYKQQPV 180 AMMEQQEEAA ITELNLLGEQ PLLSQFSFFG DQHQLGTTSN SSAYHLQTSH PFTPSTYD*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC212438 | 1e-114 | Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence |
Publications
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- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]
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