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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc10g086640.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
TALE |
Protein Properties |
Length: 259aa MW: 29316.2 Da PI: 8.7963 |
Description |
TALE family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc10g086640.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 30.6 | 5.6e-10 | 151 | 188 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
Fe ++yp+ +++ LAk++gL+ +qV++WF N R +
Solyc10g086640.1.1 151 FEHflHPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 188
664459******************************87 PP
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2 | BELL | 94.2 | 1.2e-30 | 41 | 111 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
++e+ + +kL+s+l+eV++rYk y+eqlq v+ssFe vag+g+a p+++l lka+S+hFrcL ai++q+
Solyc10g086640.1.1 41 NHEHMRNNSKLISMLDEVHRRYKEYYEQLQGVVSSFESVAGVGNASPFANLSLKALSKHFRCLIKAICDQM 111
57888999************************************************************995 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MSHNKAEEIS LELMQDISGI YAHKLLQDHH HSLGTMDEVS NHEHMRNNSK LISMLDEVHR 60 RYKEYYEQLQ GVVSSFESVA GVGNASPFAN LSLKALSKHF RCLIKAICDQ MKSCDGIGKG 120 NYNNLERGGY VWRPQRGLPE RAVTVLRAWL FEHFLHPYPT DSDKVMLAKQ TGLSRNQVSN 180 WFINARVRVW KPMVEEIHML ETNKSSSHIN NNDPEMNLSS SGGVSLTLGL HHQNNNKALS 240 FPRNAARRFG IDPNNIIA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Publications
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- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] - Khan M, et al.
Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] - Andrés F, et al.
Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] - Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] - Sehra B,Franks RG
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] - Simonini S,Stephenson P,Østergaard L
A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]
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