PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 363aa MW: 38946.2 Da PI: 9.5429

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g086440.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.2	1.6e-37	84	143	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+++kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+ss Solyc10g086440.1.1 84 EATQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSS 143 56789****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	1.62E-5	45	55	No hit	No description
ProDom	PD007478	9.0E-32	67	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.1E-32	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type
SuperFamily	SSF101447	1.62E-5	251	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MVFSSISAYL DPSNWQQQVG YSIPNPQLPS GLSQPTPPRP LASTPPPPPP PPPPPQPHHV 60 GGGGSIRPGS MADRARLANI PMSEATQKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY 120 WTRGGALRSV PVGGGCRRNK RSSTSNSSTS AKSSNNNTKS QGSSQTTNSG STSNNNSSPS 180 SAASLLGLMN PPIHPLRFMS PLGPLTDQHF TPNEMNYTSI SSPSPAPIVM GTNENMNFQL 240 GMGSNLEQWR LHQQLVNQFP YNLYGGLDSS PASGSGSASA SGLYPFHQAH YDASGGGVIS 300 QIRPKVSNPM LTQLALMKME DDQDHVASMP RQFLGNENWT SNANWNELSA SFSSSSTSNN 360 VL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MVFSSISAYL DPSNWQQQVG YSIPNPQLPS GLSQPTPPRP LASTPPPPPP PPPPPQPHHV  60
GGGGSIRPGS MADRARLANI PMSEATQKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY  120
WTRGGALRSV PVGGGCRRNK RSSTSNSSTS AKSSNNNTKS QGSSQTTNSG STSNNNSSPS  180
SAASLLGLMN PPIHPLRFMS PLGPLTDQHF TPNEMNYTSI SSPSPAPIVM GTNENMNFQL  240
GMGSNLEQWR LHQQLVNQFP YNLYGGLDSS PASGSGSASA SGLYPFHQAH YDASGGGVIS  300
QIRPKVSNPM LTQLALMKME DDQDHVASMP RQFLGNENWT SNANWNELSA SFSSSSTSNN  360
VL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g086440.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233123	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence
GenBank	AC240203	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249836.1	0.0	dof zinc finger protein DOF2.4-like
TrEMBL	A0A3Q7IND4	0.0	A0A3Q7IND4_SOLLC; Uncharacterized protein
STRING	Solyc10g086440.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	7e-43	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Solyc10g086440.1.1
Entrez Gene	101262880

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]