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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc10g086290.1.1 |
Common Name | LOC101250648 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 266aa MW: 31061.2 Da PI: 7.221 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc10g086290.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed ll +++ ++G g W++++ + g++R++k+c++rw++yl
Solyc10g086290.1.1 11 KGSWTEDEDILLRKCIDKYGEGKWHLVPFRAGLNRCRKSCRLRWLNYL 58
799*******************************************97 PP
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2 | Myb_DNA-binding | 45.3 | 2e-14 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
Solyc10g086290.1.1 64 RGDFALDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 109
5677789***************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MNIAKTLGVR KGSWTEDEDI LLRKCIDKYG EGKWHLVPFR AGLNRCRKSC RLRWLNYLRP 60 HIKRGDFALD EIDLILRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHLH KKLLITPPQI 120 QENKYNNTLK IITESTILRP RPRPGPQPRT FSSENNISWC TNNSMITNTL DKDDEQHNKE 180 IAVNICEKPT KKTPSSSIDD DGVQWWTNLL ENWKEFEEEA TAVLNFEEEN KLLPNLLYEE 240 HNSTTMQHGE NDDFSVDIDL WNLFN*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC240203 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Li T, et al.
Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]
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