PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 260aa MW: 29751.8 Da PI: 6.9194

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g086270.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.2e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll ++++++G g W++++ + g++R++k+c++rw++yl Solyc10g086270.1.1 13 KGSWTEQEDLLLRKCINKYGEGKWHLVPIRAGLNRCRKSCRLRWLNYL 60 799*******************************************97 PP
2	Myb_DNA-binding	44.6	3.2e-14	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ Solyc10g086270.1.1 66 RGDFASDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 110 6778899*************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-22	8	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.197	8	64	IPR017930	Myb domain
SuperFamily	SSF46689	2.1E-27	10	107	IPR009057	Homeodomain-like
SMART	SM00717	6.7E-15	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-16	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	6.78E-10	15	60	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-20	63	115	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-13	65	113	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.99	65	115	IPR017930	Myb domain
Pfam	PF00249	1.0E-12	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	9.21E-9	72	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009753	Biological Process	response to jasmonic acid
GO:0031540	Biological Process	regulation of anthocyanin biosynthetic process
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MNSTSMSSLG VRKGSWTEQE DLLLRKCINK YGEGKWHLVP IRAGLNRCRK SCRLRWLNYL 60 RPHIKRGDFA SDEIDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTN LLRKVNITKI 120 VPREKFKSKR GEISTKIEII KPQARKFISN TEKNITNNIV IVDKEEECKE IISEKQTRDA 180 SIDNGDEWWA NLLENCNDDV VEEEEGGGGG VTDYGKTITS LLHEEITPPL NGGGNIMQQE 240 QSDGWDDFFV DIDIWDLLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-23	13	116	7	109	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00213	DAP	Transfer from AT1G66370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g086270.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ705332	0.0	Solanum lycopersicum cultivar Legend ANT1-like protein mRNA, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249668.1	0.0	transcription factor MYB113
Swissprot	Q9FNV9	2e-63	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A3Q7INJ7	0.0	A0A3Q7INJ7_SOLLC; Uncharacterized protein
STRING	Solyc10g086270.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-65	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Solyc10g086270.1.1
Entrez Gene	101250068

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]