PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 276aa MW: 31822.1 Da PI: 8.4151

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g086250.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll d+++++G g W++++++ g++R++k+c++rw++yl Solyc10g086250.1.1 13 KGSWTEQEDSLLRDCIQKYGEGKWHLVPARAGLNRCRKSCRLRWLNYL 60 799*******************************************97 PP
2	Myb_DNA-binding	45.7	1.5e-14	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++ Solyc10g086250.1.1 66 RGDFAPDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTH 110 788999**************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-22	6	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.371	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	2.07E-28	10	107	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-16	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	1.91E-10	15	60	No hit	No description
PROSITE profile	PS51294	24.341	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-22	63	115	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-14	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-13	66	110	IPR001005	SANT/Myb domain
CDD	cd00167	2.39E-9	71	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MNTPMCASLG VRKGSWTEQE DSLLRDCIQK YGEGKWHLVP ARAGLNRCRK SCRLRWLNYL 60 RPHIKRGDFA PDEVDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTH FHKKLSIIAP 120 HLHPHSRPRS HPRLQIKHKS IAVTKNEIIR PQPRNFSNVK KNDSHWCNNK SMITNTLDKD 180 DKRCNEIVVN ICEKPIGENT SSIDDGVEWW TNLLENCIEI EEETANTNFG KTPTMLLHEE 240 ISPPLVNGED NSMQQGPTNN WDDFSTDIDL WNLLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-23	13	115	7	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.7603	0.0	flower\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Function -- GeneRIF ? help Back to Top
LeAN2 had an important function in heat stress resistance. [PMID: 25437348]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g086250.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ647117	0.0	Solanum lycopersicum cultivar Zhongshu-6 MYB transcriptional factor mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001265992.1	0.0	transcription factor MYB75
Swissprot	Q9FNV9	1e-61	MY113_ARATH; Transcription factor MYB113
TrEMBL	K4D457	0.0	K4D457_SOLLC; MYB transcriptional factor
STRING	Solyc10g086250.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-62	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Solyc10g086250.1.1
Entrez Gene	101247276

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Meng X, et al. An R2R3-MYB gene, LeAN2, positively regulated the thermo-tolerance in transgenic tomato. J. Plant Physiol., 2015. 175: p. 1-8 [PMID:25437348] Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]