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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc10g086130.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARF |
Protein Properties |
Length: 632aa MW: 70644.8 Da PI: 7.3225 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc10g086130.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.4 | 2.7e-23 | 120 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f k+lt+sd+++ g +++pk++a+++ +++ +tl+ +d +g+sW++++iyr++++r++lt+GW+ Fv++++L +gD++vF
Solyc10g086130.1.1 120 FAKTLTQSDANNGGGFSVPKNCADTIfptldynVNPPV--QTLSATDIHGKSWQFRHIYRGTPERHLLTTGWSTFVNQKKLVAGDSIVFL- 207
89**********************99****98533333..49************************************************. PP
-SSSEE..EEEEE- CS
B3 85 dgrsefelvvkvfr 98
++++ + ++++r
Solyc10g086130.1.1 208 -RNENDKISIGIRR 220
.4577777888887 PP
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2 | Auxin_resp | 99.1 | 6.3e-33 | 280 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a + a+++++Fev+++P+++t+eF vk+++v++al+++++ GmRfkm feted ++Gt+++v++ dp++Wp+S+Wr+L+
Solyc10g086130.1.1 280 ATKLATNGQPFEVIFYPQSTTPEFFVKASRVKAALQIPWCSGMRFKMPFETEDLVISWFMGTISSVQANDPSQWPDSPWRMLQ 362
567899************************************************99999**********************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 632 aa
Download sequence Send
to blast |
MFLQNLLMAD NKSNCFDSRL WQACAGTMVK MPAVDSIVLY FPQGHAEHAG VNVEFRSDVK 60 IPSYIPCRVS SIKYMAERET DEVFAKIRLT PVRLSEFFET PEEEGMVKIG SDNSRKPLSF 120 AKTLTQSDAN NGGGFSVPKN CADTIFPTLD YNVNPPVQTL SATDIHGKSW QFRHIYRGTP 180 ERHLLTTGWS TFVNQKKLVA GDSIVFLRNE NDKISIGIRR IKKKSVAMEP ETSPWWFPSV 240 GNLTIPRGGF SAFLRDDHNT NSSWSLINRG NVKAESVIEA TKLATNGQPF EVIFYPQSTT 300 PEFFVKASRV KAALQIPWCS GMRFKMPFET EDLVISWFMG TISSVQANDP SQWPDSPWRM 360 LQVTWDEPNL LHNVMCVNPW LVEPVSNMPT INFNPYTPPL KKLRLSHTSD FPLNGHLPMS 420 GFPNNHLEFS IDPPMSSFPI HHLLRPYGCP PNNTPVGMQG ARHAPYNLSL PDIHTNNLLS 480 SLSPVGFPSL HHVVASPNTS NNTMIPKPSR NAGISSLLTL GSSTQTNKKF DSEKTTQFVL 540 FGQPIVIEQQ TSQSNSRISV SPRHATNSFS DGNEYKKENT SDSSDTSFVH NSVPDYLPSK 600 SFRSEENVEI GHSKVFIESE DIGQTKQLGE W*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HM565131 | 0.0 | Solanum lycopersicum auxin response factor 14 (ARF14) mRNA, complete cds |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Huang J,Li Z,Zhao D
Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]
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