PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g084910.1.1 | ||||||||
Common Name | LOC101264877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 361aa MW: 40888.8 Da PI: 6.1357 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Solyc10g084910.1.1 25 YRCSFCKRGFSNAQALGGHMNIH 47 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.89E-6 | 22 | 51 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.1E-4 | 23 | 49 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.468 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0053 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEKFNQIIPW SSEELLGLGH VNKFYRCSFC KRGFSNAQAL GGHMNIHRRD RARLREFSSD 60 QNLLSLDINN SVYPPPPPGN DDLLQRDNEG IISSPSKRPC VMVSCDHNPP HPPPPPLALP 120 HDVLLQREES SYGEKTISSP SKRSCVKVSC DHNPPPLIPP HDVLLQQEES SYGEKTISRP 180 SKRPCVMVSC DHNPPHPHPH PLALPHDVSL QREESSYGET TISSSSKRPC FTYDQEKDHY 240 DHNLSLVNCD LFQREVSSND ETIISSYSKR LCVTYDEEND HLITSKVNHY DHNQEVIIGD 300 HLQLPLFKET PLVKEASNCM ENGKLENKGM EQNHVSILDL ELRLGMDSTD TDPRFELHKL 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g084910.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249544.1 | 0.0 | uncharacterized protein LOC101264877 | ||||
TrEMBL | M1ARP5 | 1e-142 | M1ARP5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc10g084910.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18663 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 7e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g084910.1.1 |
Entrez Gene | 101264877 |
Publications ? help Back to Top | |||
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