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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g084340.1.1 | ||||||||
Common Name | LOC101250649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 463aa MW: 51081.2 Da PI: 6.5102 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.2e-17 | 134 | 183 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Solyc10g084340.1.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.1 | 4.4e-13 | 226 | 276 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+ + eAa+a+++a+ k +g Solyc10g084340.1.1 226 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDNEIEAARAYDKAAIKCNG 276 89********.7******...5...334336**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.12E-16 | 134 | 193 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-9 | 134 | 183 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.08E-12 | 135 | 193 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-17 | 135 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-32 | 135 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 135 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-16 | 226 | 285 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.42E-25 | 226 | 284 | No hit | No description |
Pfam | PF00847 | 2.4E-8 | 226 | 276 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-15 | 227 | 284 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-31 | 227 | 290 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.277 | 227 | 284 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-6 | 228 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-6 | 266 | 286 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MFDLNLSFDD VSVEPISVLA SEKVDEMLFN QMENSGTSNS SIVNMETSST AADDEYFSPD 60 HHRDGYAFDI LKSDREAGDR GGFVVKELFP LVNGEVGLDL SANYGDLNEQ RIGKTPQQIL 120 QAKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK 180 FRGLDADINF NISDYEEDLK QMKNFSKEEF VHILRRQSNG FSRGSSKYRG VTLHKCGRWE 240 ARMGQLLGKK YIYLGLFDNE IEAARAYDKA AIKCNGREAV TNFEPNTYEE ALSSEADTGG 300 TDHNIDLNLG ISLSSYAENQ HGNTSQIGNF QCQHGSNGLP EHHGEVRTPA STTLKSKLLL 360 HGEHTLTQNP LHWNGSNGKG SAIEKGSEVD TSLKWMGHDQ NTYDGSPTLP LFSTAASSGF 420 GNSANTAPSA ASHQLHFGSG ALPFPHSPSL TNMNLSHHYC RS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g084340.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244886 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089448.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
TrEMBL | A0A3Q7IMC9 | 0.0 | A0A3Q7IMC9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g084340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-106 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g084340.1.1 |
Entrez Gene | 101250649 |
Publications ? help Back to Top | |||
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