PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

AP2

Protein Properties

Length: 463aa MW: 51081.2 Da PI: 6.5102

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g084340.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.2e-17	134	183	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Solyc10g084340.1.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183 78*****************......55**********************998 PP
2	AP2	41.1	4.4e-13	226	276	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+ + eAa+a+++a+ k +g Solyc10g084340.1.1 226 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDNEIEAARAYDKAAIKCNG 276 89******.7**...5...334336******99********99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	4.12E-16	134	193	IPR016177	DNA-binding domain
Pfam	PF00847	2.1E-9	134	183	IPR001471	AP2/ERF domain
CDD	cd00018	6.08E-12	135	193	No hit	No description
Gene3D	G3DSA:3.30.730.10	4.5E-17	135	191	IPR001471	AP2/ERF domain
SMART	SM00380	5.9E-32	135	197	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.82	135	191	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-16	226	285	IPR016177	DNA-binding domain
CDD	cd00018	3.42E-25	226	284	No hit	No description
Pfam	PF00847	2.4E-8	226	276	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-15	227	284	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-31	227	290	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.277	227	284	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.3E-6	228	239	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.3E-6	266	286	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MFDLNLSFDD VSVEPISVLA SEKVDEMLFN QMENSGTSNS SIVNMETSST AADDEYFSPD 60 HHRDGYAFDI LKSDREAGDR GGFVVKELFP LVNGEVGLDL SANYGDLNEQ RIGKTPQQIL 120 QAKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK 180 FRGLDADINF NISDYEEDLK QMKNFSKEEF VHILRRQSNG FSRGSSKYRG VTLHKCGRWE 240 ARMGQLLGKK YIYLGLFDNE IEAARAYDKA AIKCNGREAV TNFEPNTYEE ALSSEADTGG 300 TDHNIDLNLG ISLSSYAENQ HGNTSQIGNF QCQHGSNGLP EHHGEVRTPA STTLKSKLLL 360 HGEHTLTQNP LHWNGSNGKG SAIEKGSEVD TSLKWMGHDQ NTYDGSPTLP LFSTAASSGF 420 GNSANTAPSA ASHQLHFGSG ALPFPHSPSL TNMNLSHHYC RS*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MFDLNLSFDD VSVEPISVLA SEKVDEMLFN QMENSGTSNS SIVNMETSST AADDEYFSPD  60
HHRDGYAFDI LKSDREAGDR GGFVVKELFP LVNGEVGLDL SANYGDLNEQ RIGKTPQQIL  120
QAKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK  180
FRGLDADINF NISDYEEDLK QMKNFSKEEF VHILRRQSNG FSRGSSKYRG VTLHKCGRWE  240
ARMGQLLGKK YIYLGLFDNE IEAARAYDKA AIKCNGREAV TNFEPNTYEE ALSSEADTGG  300
TDHNIDLNLG ISLSSYAENQ HGNTSQIGNF QCQHGSNGLP EHHGEVRTPA STTLKSKLLL  360
HGEHTLTQNP LHWNGSNGKG SAIEKGSEVD TSLKWMGHDQ NTYDGSPTLP LFSTAASSGF  420
GNSANTAPSA ASHQLHFGSG ALPFPHSPSL TNMNLSHHYC RS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g084340.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244886	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015089448.1	0.0	AP2-like ethylene-responsive transcription factor TOE3
TrEMBL	A0A3Q7IMC9	0.0	A0A3Q7IMC9_SOLLC; Uncharacterized protein
STRING	Solyc10g084340.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA591	24	116
Representative plant	OGRP497	17	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-106	related to AP2.7

Link Out ? help Back to Top
Phytozome	Solyc10g084340.1.1
Entrez Gene	101250649

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]