PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g084180.1.1

Common Name

LOC101248731

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 494aa MW: 54589.1 Da PI: 9.3196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g084180.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Solyc10g084180.1.1 67 FICEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	12.8	0.00036	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Solyc10g084180.1.1 144 WKCEKCSKKYAVQSDWKAHSKTC 166 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.86E-7	66	89	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	5.9E-5	67	89	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	67	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.86E-7	139	164	No hit	No description
SMART	SM00355	140	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010075	Biological Process	regulation of meristem growth
GO:0045604	Biological Process	regulation of epidermal cell differentiation
GO:0048364	Biological Process	root development
GO:0051302	Biological Process	regulation of cell division
GO:0003676	Molecular Function	nucleic acid binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MMSGDVFSFP SSVKAVLPHH HQELQTANPN PKPNTSSKKR RNLPGTPDPD AEVIALSPKS 60 LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK LEQVKKKVYI CPEKTCIHHD 120 PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS 180 RKDSFITHRA FCDALAEESS RITSVGATNL INFPNTATLL NQQQANLHGG FAGCRPDFGS 240 YTTGNNNSLH QQQQQKPRLS LWLDQQAANH NNPLQISSSS NLFDSSSTGG FQEMIQMQSQ 300 NVFGSSNSTS ANFSIAEAYN SLYSDSQNSQ LTKQNSTTPM SATALLQKAA QMGSTKSNQS 360 TFFSNNFSKL NSSSSSSPNT PTFTSLQSCE TTDQIFAKKS EDYTTSLLQS NNGLFGCPNF 420 TSSGINKSIN LDEAIMQTVG MHNTQAVSMN GMDNCLTRDF LGIKHEGNCQ FLPQEIVKFA 480 SMNSSAMGLS HLQ*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MMSGDVFSFP SSVKAVLPHH HQELQTANPN PKPNTSSKKR RNLPGTPDPD AEVIALSPKS  60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK LEQVKKKVYI CPEKTCIHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESS RITSVGATNL INFPNTATLL NQQQANLHGG FAGCRPDFGS  240
YTTGNNNSLH QQQQQKPRLS LWLDQQAANH NNPLQISSSS NLFDSSSTGG FQEMIQMQSQ  300
NVFGSSNSTS ANFSIAEAYN SLYSDSQNSQ LTKQNSTTPM SATALLQKAA QMGSTKSNQS  360
TFFSNNFSKL NSSSSSSPNT PTFTSLQSCE TTDQIFAKKS EDYTTSLLQS NNGLFGCPNF  420
TSSGINKSIN LDEAIMQTVG MHNTQAVSMN GMDNCLTRDF LGIKHEGNCQ FLPQEIVKFA  480
SMNSSAMGLS HLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-37	140	209	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-37	140	209	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.6966	0.0	flower\| fruit\| leaf\| root

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00485	DAP	Transfer from AT5G03150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g084180.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249492.1	0.0	zinc finger protein JACKDAW
TrEMBL	M1APA7	0.0	M1APA7_SOLTU; Uncharacterized protein
STRING	Solyc10g084180.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-102	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Solyc10g084180.1.1
Entrez Gene	101248731

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]