PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 201aa MW: 23542.3 Da PI: 8.4669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g083900.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+l v+ +G ++W++ a+t g++R++k+c++rw++yl Solyc10g083900.1.1 8 RGQWLEEEDERLSMMVAVFGERRWDALAKTSGLKRSGKSCRLRWLNYL 55 899*******************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	64	106	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l Solyc10g083900.1.1 64 ITADEERLIIRLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106 59***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.826	3	55	IPR017930	Myb domain
SuperFamily	SSF46689	6.97E-27	6	102	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-11	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-13	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-20	9	62	IPR009057	Homeodomain-like
CDD	cd00167	9.67E-8	11	55	No hit	No description
PROSITE profile	PS51294	25.894	56	110	IPR017930	Myb domain
SMART	SM00717	1.0E-15	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-24	63	109	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-14	64	106	IPR001005	SANT/Myb domain
CDD	cd00167	2.03E-11	65	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MQEEELRRGQ WLEEEDERLS MMVAVFGERR WDALAKTSGL KRSGKSCRLR WLNYLRPNLK 60 HGHITADEER LIIRLQKQFG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKT LIYKQESSES 120 NTSNSEQRSS ILKRDTVLNS SSNSEDNFSE KGDCSSADSF AYSSNEVTLL DWIPSWSYEQ 180 TRMEHHMYFC STNLCSCYPP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-27	5	110	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	9e-27	5	110	55	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	9e-27	5	110	55	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g083900.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249793.1	1e-148	transcription factor MYB27
Swissprot	Q9SCP1	4e-50	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A3Q7IM36	1e-147	A0A3Q7IM36_SOLLC; Uncharacterized protein
STRING	Solyc10g083900.1.1	1e-147	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	6e-51	myb domain protein 27

Link Out ? help Back to Top
Phytozome	Solyc10g083900.1.1
Entrez Gene	101247484

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]