PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 320aa MW: 36554.8 Da PI: 6.3222

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g081320.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	63	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ Solyc10g081320.1.1 63 RGHWRPHEDAKLKELVGQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 108 899***************************.*********996 PP
2	Myb_DNA-binding	58.2	1.9e-18	115	158	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ Solyc10g081320.1.1 115 RKAFSEEEEERLLSAHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 158 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.59	58	109	IPR017930	Myb domain
SMART	SM00717	5.8E-14	62	111	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-15	63	108	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.22E-28	63	156	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-26	64	116	IPR009057	Homeodomain-like
CDD	cd00167	2.66E-12	66	107	No hit	No description
PROSITE profile	PS51294	26.315	110	164	IPR017930	Myb domain
SMART	SM00717	3.0E-15	114	162	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-15	115	157	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-21	117	163	IPR009057	Homeodomain-like
CDD	cd00167	5.12E-7	126	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MNSSVGSCYV QKMNFLVPCV EENPWRLHQM ENKFKDEEEG LVDLIGIKDT NHNINGGTKL 60 CARGHWRPHE DAKLKELVGQ YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRKAFSE 120 EEEERLLSAH KMYGNKWSMI ARLFPGRTDN AVKNHWHVIM ARKHREQNSV YRRRKTSNLQ 180 QIIAPNNNNN NDDDNDDMII QSDSTISSNI VDDLQSDSTC TNLSLTPSSS KAIIHPFLMT 240 RFNHHHVEHQ GIIDPNKGLS RDEEEVKMGL YGNMSDTNSE ISASESVANN MTNIVKIYEQ 300 DEDDIKTVNF IDFLGVGAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-32	62	163	6	107	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16549	0.0	fruit\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g081320.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001335087.1	0.0	Myb-like DNA-binding family protein
TrEMBL	K4D319	0.0	K4D319_SOLLC; Uncharacterized protein
STRING	Solyc10g081320.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1684	24	70
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	8e-73	myb domain protein 105

Link Out ? help Back to Top
Phytozome	Solyc10g081320.1.1
Entrez Gene	101259098

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]