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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc10g080540.1.1 |
Common Name | LOC101264164 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HD-ZIP |
Protein Properties |
Length: 355aa MW: 39809.1 Da PI: 8.7439 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc10g080540.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 194 | 248 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Solyc10g080540.1.1 194 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 248
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 127.7 | 4.9e-41 | 194 | 283 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +l
Solyc10g080540.1.1 194 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLHKELQELR-AL 283
69*************************************************************************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MELALSLGGD NTPKPILFLE KSSSSSSSLH ENKVNKDVGF CMVLGKSCNE VERKKRSKKH 60 QEIRSSSIDP SLQLDLIPFS HGVSYNTCSK LSFPWLSQNL ATHEPAGLTN GPALDMTNRM 120 QLVVAEEAEE GAALSSPNSE ISNFQMNFPI YRNGKLINTK RDQCERDRDN NRWGNGNNYS 180 CSRISDEELD ASARKKLRLT KEQSAFLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF 240 QNRRARTKLK QTEVDCEYLK KCCETLTEEN KRLHKELQEL RALKSSQPFY MQLPATTLTM 300 CPSCERVATT TSVTTTTTTT TPATTTTTTV AASNAVALHN HKLISVMTKL ECTN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 242 | 250 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC244286 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence |