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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc10g080480.1.1 |
Common Name | LOC101262368 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 290aa MW: 30304.2 Da PI: 9.4704 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc10g080480.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
Solyc10g080480.1.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
7789******************** PP
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2 | zf-CCCH | 31.2 | 3.7e-10 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC++f+ Ck+Gd+C++aHg+
Solyc10g080480.1.1 97 KTKLCNRFSTAEGCKFGDKCNYAHGE 122
9***********************96 PP
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3 | zf-CCCH | 37.5 | 3.9e-12 | 257 | 280 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
kt+lC +fa+ G C +GdrC+FaHg
Solyc10g080480.1.1 257 KTKLCENFAK-GSCTFGDRCHFAHG 280
9*********.*************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.91 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-8 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-8 | 94 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-13 | 94 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.9E-15 | 156 | 233 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.6E-13 | 161 | 231 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.634 | 162 | 226 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.2E-16 | 163 | 231 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.38E-14 | 164 | 226 | No hit | No description |
Pfam | PF00013 | 7.5E-12 | 164 | 228 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-15 | 253 | 286 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 254 | 285 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 255 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.22 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 257 | 280 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDYRKRTRND VGANVNGGVK KYKPEVDSIS GGVGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYSAATQ MMKLTPAPSL RNAAAPPYSN GNAPSLKTKL CNRFSTAEGC KFGDKCNYAH 120 GEWELGKPTI PSQEDPRAMG FGSMPGRFGG GRVESAASFG TSATAKISVD ASLAGAIIGK 180 GGVNSKQICR QTGAKLAIRD HETDANLRNI ELEGTFEQIS QASAMVRELI NSLGPVGGGG 240 RTHGNSGGAA PPMNNLKTKL CENFAKGSCT FGDRCHFAHG AAELRKTGE*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC244286 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence |