PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 375aa MW: 42389.5 Da PI: 6.236

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g080460.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.4	4.2e-30	218	272	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LH+rF+e+v++LGG++kAtPk+il+lm+ ++Ltl+hvkSHLQkYR Solyc10g080460.1.1 218 KTRIRWNEDLHDRFLECVNRLGGADKATPKQILNLMDSDCLTLDHVKSHLQKYRN 272 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.561	215	275	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-15	216	272	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-26	216	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-25	218	273	IPR006447	Myb domain, plants
Pfam	PF14379	1.0E-19	301	347	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSIQRFIITQ GNEYFSSDYS IEVSKNSAQN LVDQEIQYPS YMGTCLPIAS SSSSSIINCI 60 GSPSSAFFAT ERCLGLTQYD NQYDTSELIK NCDVQMSSFD PQQCKNGILK DPLVQAEPDF 120 RHEISMPSFI RTEFSTSPFS DVSEAEKESL LHLKNELLGE FDTSYRRHPS LPFHGNQDYC 180 LSHDLCCSQL ANTRQQPASP SLTFHNSASS GVFHKPSKTR IRWNEDLHDR FLECVNRLGG 240 ADKATPKQIL NLMDSDCLTL DHVKSHLQKY RNAKHPESVG KSEKRNSSDA MTDIESKTGR 300 EIKEALKMQL EVQRCLHEQL ETQRTLQMRI EEQAKKLKMI LDQQRKTNMT LLGTRNSNIS 360 SPGVEILVVQ DSDN*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSIQRFIITQ GNEYFSSDYS IEVSKNSAQN LVDQEIQYPS YMGTCLPIAS SSSSSIINCI  60
GSPSSAFFAT ERCLGLTQYD NQYDTSELIK NCDVQMSSFD PQQCKNGILK DPLVQAEPDF  120
RHEISMPSFI RTEFSTSPFS DVSEAEKESL LHLKNELLGE FDTSYRRHPS LPFHGNQDYC  180
LSHDLCCSQL ANTRQQPASP SLTFHNSASS GVFHKPSKTR IRWNEDLHDR FLECVNRLGG  240
ADKATPKQIL NLMDSDCLTL DHVKSHLQKY RNAKHPESVG KSEKRNSSDA MTDIESKTGR  300
EIKEALKMQL EVQRCLHEQL ETQRTLQMRI EEQAKKLKMI LDQQRKTNMT LLGTRNSNIS  360
SPGVEILVVQ DSDN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	218	275	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	218	275	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	218	275	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	218	275	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	218	275	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24152	0.0	fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g080460.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244286	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249281.1	0.0	uncharacterized protein LOC101261766 isoform X1
TrEMBL	A0A3Q7IKR5	0.0	A0A3Q7IKR5_SOLLC; Uncharacterized protein
STRING	Solyc10g080460.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc10g080460.1.1
Entrez Gene	101261766

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]