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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g080310.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 74aa MW: 8382.6 Da PI: 10.6916 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 29 | 72 | 2 | 49 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a Solyc10g080310.1.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEA 72 69****999.**********965...5*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.99E-22 | 28 | 72 | No hit | No description |
Pfam | PF00847 | 5.3E-13 | 28 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-25 | 29 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-18 | 29 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.994 | 29 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 29 | 72 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MDSYKRNPLK PWKKGPARGK GGPQNALCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA 60 TAEEAAMAYD EAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 29 | 73 | 5 | 50 | ATERF1 |
3gcc_A | 3e-14 | 29 | 73 | 5 | 50 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g080310.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215492 | 6e-15 | Solanum lycopersicum chromosome 2 clone C02SLm0128E12, complete sequence | |||
GenBank | AC226504 | 6e-15 | Solanum lycopersicum chromosome 2 clone C02HBa0106H06, complete sequence | |||
GenBank | AF273333 | 6e-15 | Lycopersicon esculentum clone BAC 19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249756.1 | 2e-47 | dehydration-responsive element-binding protein 2F | ||||
Refseq | XP_015056203.1 | 2e-47 | dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q9SVX5 | 6e-38 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A3Q7ILE3 | 5e-46 | A0A3Q7ILE3_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1C6S8 | 8e-46 | M1C6S8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc10g080310.1.1 | 7e-47 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400060970 | 1e-46 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7098 | 23 | 29 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 3e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g080310.1.1 |
Publications ? help Back to Top | |||
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