PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g080260.1.1 | ||||||||
Common Name | LOC101258208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 698aa MW: 76463.8 Da PI: 7.2283 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.6e-07 | 279 | 299 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Solyc10g080260.1.1 279 PCPEFRK-GACQRGDMCEYAHG 299 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.71E-16 | 17 | 152 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 6.7E-9 | 54 | 128 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.14 | 59 | 89 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 5.26E-13 | 59 | 137 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.7E-15 | 59 | 140 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.99 | 59 | 135 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0053 | 94 | 126 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.007 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.0E-5 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.568 | 279 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-5 | 279 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 54 | 309 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MTMSNSTIET EDTFASLLEL AANDDIEAFK IWIERDLASI HEVGLWYGRQ KGSKQMVLDH 60 RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA 120 GADPHSKDIN GHYPIDVIVV SPNFHPVKSC LESLLMTSTI GDCKLRVSVS TSSSSPPRSP 180 SPGNRSPYSA SDSTFSPKSA KSSDLPSYSI PEKKEYPVDP SLPDIKNDIY SSDEFRMFSF 240 KIRPCSRAYS HDWTECPFLH PGENARRRDP RKYHYSCVPC PEFRKGACQR GDMCEYAHGV 300 FECWLHPAQY RTRLCKDGID CNRRVCFFAH KQDDLRPLYV STGSAVPSPC GNSAAVNAMD 360 FAAAMGLIPG SPSSVSVMSP SPFTPPVSPS ANGISSMGWA QRNAPPLHLP GSFVHSSRLW 420 SSLSARGIPA ADLSTCPDFD VQRQQFLNEF SCLSQRNSMS SDSLNHSVRP MTFTRANLED 480 YFPAESSSPR FSDRTVAQSV YSPTHKSAVC SPFQQQQQNL LSPINTNFSP RNIDNPLLQA 540 SFGVPSSGKM SPRAMEPISP RNSRVSILAQ RDRQQQFRSL SSRDLGSNVS AIVGSPTDTW 600 LKWGTDMGKP DWAVNTEELG RLRQSSSFKL ANNGKEPDLS WVQSLVKESP PEMMKDKCVR 660 HVSEPELTGA GADLGEGSTS HSQIDQLSAW METKNTN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.5364 | 0.0 | flower| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g080260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013776 | 0.0 | Lycopersicon esculentum clone 132664R, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249271.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A3Q7IKM2 | 0.0 | A0A3Q7IKM2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g080260.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g080260.1.1 |
Entrez Gene | 101258208 |
Publications ? help Back to Top | |||
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