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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc10g080200.1.1 |
| Common Name | LOC101256930 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
C2H2 |
| Protein Properties |
Length: 273aa MW: 30271.1 Da PI: 8.1347 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc10g080200.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.9 | 0.00017 | 210 | 232 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp C+ +Fs+ L++H ++ H
Solyc10g080200.1.1 210 QCPQCTLRFSSVTALVSHVQKvH 232
7******************9988 PP
|
| 2 | zf-C2H2 | 16.2 | 2.9e-05 | 244 | 266 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp C+k F+++ +L+ H + H
Solyc10g080200.1.1 244 VCPRCSKGFRDPVSLVEHVEReH 266
7*****************99888 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF118310 | 4.71E-11 | 6 | 50 | No hit | No description |
| Gene3D | G3DSA:4.10.1110.10 | 2.4E-9 | 10 | 50 | IPR000058 | Zinc finger, AN1-type |
| PROSITE profile | PS51039 | 7.462 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.0029 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 2.5E-11 | 13 | 50 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 7.7E-10 | 91 | 146 | IPR000058 | Zinc finger, AN1-type |
| SuperFamily | SSF118310 | 6.67E-9 | 93 | 147 | No hit | No description |
| PROSITE profile | PS51039 | 7.757 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.047 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 3.7E-7 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00355 | 0.017 | 209 | 232 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 3.57E-5 | 210 | 262 | No hit | No description |
| Pfam | PF13894 | 7.3E-4 | 210 | 232 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 211 | 232 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 7.2 | 243 | 266 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.203 | 243 | 271 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 245 | 266 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MGTPEFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVFCLEHR SYNRHHCPTA NNNDVTVVVC 60
PLCAKGVHLI PDEDPNITWE SHVNTDCDPS NYEKATKKRK CPVPGCREFL TFSNTIRCRE 120
CTVDHCLKHR FGPDHKCPGR KKPEAAFSFM NFRTGSRNGE PNKAPATSSS SWASSFFKAA 180
EAGMAKLGSG RGQSSNATNH SGSANRQVEQ CPQCTLRFSS VTALVSHVQK VHEKNDVMNL 240
TVDVCPRCSK GFRDPVSLVE HVEREHKGTS KA*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in environmental stress response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ442198 | 0.0 | Solanum lycopersicum stress-associated protein 12 (SAP12) gene, partial cds |
