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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g079680.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 194aa MW: 22099.7 Da PI: 10.408 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.7e-13 | 3 | 57 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er+RR+++N +++Lr+llP+++ k ++kKls +++ + eYI +L Solyc10g079680.1.1 3 KKLNHNASERNRRKKMNFLYSTLRSLLPPPTnKHQKKKLSFPATVSYVQEYIPEL 57 6789*************************665888888**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.986 | 2 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.59E-8 | 2 | 62 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-13 | 2 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-11 | 2 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 3 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-6 | 8 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEKKLNHNAS ERNRRKKMNF LYSTLRSLLP PPTNKHQKKK LSFPATVSYV QEYIPELKKE 60 IERLSKTKDL LLSKKSNYSL LKIDDNNKRK LIIGGTSCNS STTSICASQL SNSQVLVQIS 120 TTQENNFPIS QVFASVEEDG LILLNASSFK SFGDKIFHSL HFQMQGPIEM DIQVLKTKLL 180 VMCEKRRKNS YIV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.17347 | 0.0 | cell culture |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g079680.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249750.2 | 1e-138 | transcription factor bHLH100 | ||||
TrEMBL | A0A3Q7IL29 | 1e-136 | A0A3Q7IL29_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g079680.1.1 | 1e-139 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 | Representative plant | OGRP2826 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g079680.1.1 |
Publications ? help Back to Top | |||
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