PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g079660.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 698aa    MW: 78715.5 Da    PI: 5.5196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g079660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-1471123155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR++iNs ++ Lr+llP+ +   + kKls  +++ +  +YI +Lq
  Solyc10g079660.1.1  71 KKLNHNASERDRRKKINSLYSSLRSLLPPsD---HTKKLSIPSTVSRILKYIPELQ 123
                         6789*************************44...6666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.55770122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-1570140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1171123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1271137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.54E-571127No hitNo description
SMARTSM003531.1E-1076128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF483716.19E-11265424IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.104.9E-12271459IPR011989Armadillo-like helical
CDDcd000208.24E-4272403No hitNo description
SuperFamilySSF483715.04E-26443692IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.109.8E-22460691IPR011989Armadillo-like helical
CDDcd000201.48E-7525640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MLAISSSSPP LFSTTTNNFG WLLEDLISHE LTNSGETSNS SQKSLQHCDS NKFDQIIINS  60
GDQYQPDQTV KKLNHNASER DRRKKINSLY SSLRSLLPPS DHTKKLSIPS TVSRILKYIP  120
ELQSEVERLV QKKEEFTSKN ILNKPKRIKG GIENSSFVIS TSELGDKEIV IQISTLKINK  180
GSISEAISQL EDEGLVLLNA TSFETFEDRV FYTLHFQFEK LPEMMKDFTV GLALIEQLPN  240
IAPFLLESAA YRIMLLIVNK DDDHYDLDMD CFFNNGIVDN LVECCRSRNW RSLRRQAAET  300
LRELVNCGTM AQNQELLRRG VVTIFLQMLN DEEAIDLDDE EWFDDLLVVE AVKTLALLST  360
KVDVRGDLVT AFVEQNLCRR LMLLFRNTRH TIVENVLTFV ENFLTIGTEE QMQVLLDNQV  420
LHHLRLVIVE PVVSDLYLLG GQYKVVEILG NFARRSRRLR DLVIDSGEDL ISLFRVLRSL  480
ADDSIVAFDA SPAISAARTI GYLCFGSPPP PFDKLRPSLP ILRFLINQLE PHIGERACPV  540
IKHACLIIAC LARGGFDPIN ALIDENMCPI LVMLLAHPHS EVVASVLKVV ENFLKNGTDN  600
QIQVLHDSQV LQHVLEIVMN HDNLPPLHLR SVCRAIANIV NYRSSQIQRM VDAGIFPSII  660
QISINQEVGD TKYEAIYAIS SVVTRGSHEQ IRVSAVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2yns_A3e-27407692110370IMPORTIN SUBUNIT ALPHA-1A
2yns_B3e-27407692110370IMPORTIN SUBUNIT ALPHA-1A
4b8o_A3e-27407692110370IMPORTIN SUBUNIT ALPHA-1A
4b8p_A3e-27407692110370IMPORTIN SUBUNIT ALPHA-1A
4b8p_B3e-27407692110370IMPORTIN SUBUNIT ALPHA-1A
4bpl_A3e-2740769274334IMPORTIN SUBUNIT ALPHA-1A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g079660.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772883.10.0PREDICTED: importin subunit alpha-1b-like
TrEMBLA0A3Q7IKM40.0A0A3Q7IKM4_SOLLC; Uncharacterized protein
STRINGSolyc10g079660.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1468022
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-34bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]