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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc10g079380.1.1 |
Common Name | LOC101254651 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 256aa MW: 29916.9 Da PI: 8.0031 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc10g079380.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 109.8 | 2e-34 | 24 | 115 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++ weF+++ F+kg+k+
Solyc10g079380.1.1 24 FLLKTYMLVEDPATDDVISWNSDGSAFIVRQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTNQ---------WEFSNDLFRKGDKD 105
9****************************************************************988.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll++i+rkk
Solyc10g079380.1.1 106 LLCDIRRKKA 115
********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MGELEDECER NLLEYVRKAS TPPFLLKTYM LVEDPATDDV ISWNSDGSAF IVRQPAEFAR 60 DLLPTLFKHS NFSSFVRQLN TYGFRKITTN QWEFSNDLFR KGDKDLLCDI RRKKARTNKQ 120 QPNKNIRKES EDEDQKSSSS TYNSSSSFEY NSLVDENKRL KMENGELSYE LSLVNKKCKD 180 LIDLVAILSK KSKEEEKKEG QKGKRPMLFG VRLEVEEEIE RKRKRVEFNE IASLFLSQTM 240 QIKIGKEDIY YRTIE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1hks_A | 2e-21 | 19 | 113 | 2 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 2e-21 | 19 | 113 | 2 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
5d8k_B | 2e-21 | 22 | 113 | 3 | 105 | Heat shock factor protein 2 |
5d8l_B | 2e-21 | 22 | 113 | 3 | 105 | Heat shock factor protein 2 |
5d8l_D | 2e-21 | 22 | 113 | 3 | 105 | Heat shock factor protein 2 |
5d8l_F | 2e-21 | 22 | 113 | 3 | 105 | Heat shock factor protein 2 |
5d8l_H | 2e-21 | 22 | 113 | 3 | 105 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC244599 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-35a7 map 10, complete sequence |