PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g079070.1.1
Common NameLOC101258908
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 362aa    MW: 39760.5 Da    PI: 6.2962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g079070.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09204251455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Solyc10g079070.1.1 204 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 251
                         8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-9198255No hitNo description
SuperFamilySSF474592.88E-15198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15200268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDNLIECIEA GEARSENCGA RMGEIKDGFH QFGEEILSVT SEGGSSFTAL LGLPPNQAVE  60
LLVQSPETDK IASDKLAISE PHYRYPPPPP IFPSDIALID RASKFSVFAA AGNSPESNST  120
LSNSGSKSLF VKQEPLDSEC NHNSSPATSN PLVHQKSTKR KEREKKVKET SKKGKKSAND  180
TSEDGGEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC NKISGTAMVL  240
DEIINHVQSL QRQVEFLSMR LAAVNPRVDF NLESLFAAER SGSHVESNLQ DMVVPPIWAE  300
GQSSGNRNQY QHLWLIEGFH QPAWGRLEDN SSFVTPENSL LTYDSSANSA SLHPNQLKME  360
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.76540.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g079070.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442980.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence
GenBankAC2445880.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249191.10.0transcription factor bHLH48
TrEMBLA0A3Q7JEW40.0A0A3Q7JEW4_SOLLC; Uncharacterized protein
STRINGSolyc10g079070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.25e-72bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]