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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc10g079050.1.1 |
| Common Name | LOC101258607 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
bHLH |
| Protein Properties |
Length: 381aa MW: 41705.5 Da PI: 8.4718 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc10g079050.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 39.3 | 1.2e-12 | 313 | 358 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk Lq
Solyc10g079050.1.1 313 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKGLQ 358
689*********************7....688*****************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MDSSEFEKNQ NNSGLLRFRS APSSFLENFI DGVGNNGNMG SENKGLSSKF NLDGLNNQLV 60
SQNSLDSKVF ANLSSNSQLP PQYPRQNSTV HMVGSMEGGG GYRVMGSVLG NSNNHHQGQN 120
KLASNLMRQN SSPAGLFSQL NSLNGYATLK GGAGGYRMAT GANGDPNPSS SRLKDHFGFS 180
SVTPSSLGML SRISEVDDES SIATDLDDDE KRGNGNSEPQ LYNMGFPFNS WSDHSQFQQT 240
LTGHKRELDS EGNKLFANAQ IEELGNRPPI LSHHLSLPKT PADIAAMEKL LHFQDTIPCK 300
IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VEYIKGLQKQ 360
YKVLTDCRAN CKCSAMQKPD *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC244298 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence |
| GenBank | AC244588 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence |
