PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 406aa MW: 46682.9 Da PI: 4.3739

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g076370.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.4e-18	67	125	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+ +++ g k+ kr +lg++ ta +Aa a+++a+k ++g Solyc10g076370.1.1 67 CKYRGVRQRT-WGKWVAEIREpVYISGqyKSkgKRLWLGTYSTAGDAAVAYDEAAKVMYG 125 79***999.******666677794456*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.03E-29	67	135	No hit	No description
Pfam	PF00847	5.0E-11	67	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.352	68	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-19	68	134	IPR016177	DNA-binding domain
SMART	SM00380	6.9E-35	68	139	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-28	68	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.8E-9	69	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.8E-9	99	115	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MDFYDNRKVK RRRNGSDSIE EILLRWKNFN QEVNWNHEQV KKKRKSPGNG SNKGCMPGKG 60 GPENSGCKYR GVRQRTWGKW VAEIREPVYI SGQYKSKGKR LWLGTYSTAG DAAVAYDEAA 120 KVMYGSNAIL NFPNSSNGNI TRTSSGQSSI DHEESVVDDE KKTEIESDLK DDDGGVVVNM 180 DLSYDYANHG SPACSWTEEE LEVITEENSE IELTNLECDS RFFHKSHVKV ERPIMEEEID 240 EDEFVHNDVS NTIDVEPTVM FSKDDFSRLD ETRNSNDQIV LQDMDFRSSE NLNEDVSTRL 300 EYMEHFLMDD NCSMEAANIS DIICLTENHD EAFDFQRFLE ESFDFELNYA KNEEQFDCTY 360 AYNQQIDHQN SETNFEIRSD GIRKEKNLHG FGLDDFGASN NQRKI*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MDFYDNRKVK RRRNGSDSIE EILLRWKNFN QEVNWNHEQV KKKRKSPGNG SNKGCMPGKG  60
GPENSGCKYR GVRQRTWGKW VAEIREPVYI SGQYKSKGKR LWLGTYSTAG DAAVAYDEAA  120
KVMYGSNAIL NFPNSSNGNI TRTSSGQSSI DHEESVVDDE KKTEIESDLK DDDGGVVVNM  180
DLSYDYANHG SPACSWTEEE LEVITEENSE IELTNLECDS RFFHKSHVKV ERPIMEEEID  240
EDEFVHNDVS NTIDVEPTVM FSKDDFSRLD ETRNSNDQIV LQDMDFRSSE NLNEDVSTRL  300
EYMEHFLMDD NCSMEAANIS DIICLTENHD EAFDFQRFLE ESFDFELNYA KNEEQFDCTY  360
AYNQQIDHQN SETNFEIRSD GIRKEKNLHG FGLDDFGASN NQRKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	6e-19	69	133	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	12	NRKVKRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24376	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g076370.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF500011	5e-07	Lycopersicon esculentum dehydration responsive element binding protein (DREB1) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010327719.1	0.0	dehydration-responsive element-binding protein 2A
TrEMBL	A0A3Q7IJR0	0.0	A0A3Q7IJR0_SOLLC; Uncharacterized protein
STRING	Solyc10g076370.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7965	15	30
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	1e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc10g076370.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]