 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Solyc10g054070.1.1 |
| Common Name | LOC101255342 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
SRS |
| Protein Properties |
Length: 188aa MW: 21404.2 Da PI: 8.9206 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc10g054070.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 167.5 | 7.1e-52 | 14 | 145 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93
s++++C+dCGnqakkdC + RCRtCCk+rg++C+thvkstW+p++ rr+r+++ +++ ++ ++kr+r + al +t
Solyc10g054070.1.1 14 SNNKRCEDCGNQAKKDCLYFRCRTCCKTRGYQCQTHVKSTWIPISTRRSRHHHPSSTV-------QQPNPKRHRPN-----HALLQTG--- 89
56789********************************************966655543.......33345555543.....3333333... PP
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
e e+++lP+evs +a+frcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG +
Solyc10g054070.1.1 90 -G---EEEKEELPSEVSLPAIFRCVRVSSVDNMVDQYAYQTSVNIAGHVFKGILYDQGNN 145
.2...345678***********************************************75 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MMMREDEGIV ISSSNNKRCE DCGNQAKKDC LYFRCRTCCK TRGYQCQTHV KSTWIPISTR 60
RSRHHHPSST VQQPNPKRHR PNHALLQTGG EEEKEELPSE VSLPAIFRCV RVSSVDNMVD 120
QYAYQTSVNI AGHVFKGILY DQGNNMPNQT SSRGFHQQQL TNFTPPISTT YPTFMPGMQL 180
FQYPKSS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC245809 | 1e-169 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-60l14 map 10, complete sequence |
